Cow genome map

Conread name: rpgl15_e18.y1

Conread position: 31-185
Cow position: chr5:25206765-25206605 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 31, 9

Conread position: 32-218
Cow position: chr5:32945800-32945988 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 155
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 104, 49

Conread position: 33-184
Cow position: chr5:24098577-24098727 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 103, 8

Conread position: 33-272
Cow position: chr5:46630513-46630273 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 104, 8

Conread position: 35-156
Cow position: chr5:3504321-3504200 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 101, 48

Conread position: 35-178
Cow position: chr5:76123650-76123509 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 101, 25

Conread position: 35-180
Cow position: chr5:57977189-57977332 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 123
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 101, 6

Conread position: 35-185
Cow position: chr5:32733322-32733173 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 124
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 101, 10

Conread position: 35-191
Cow position: chr5:26769740-26769890 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 102, 10

Conread position: 35-191
Cow position: chr5:27570042-27570197 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 128
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 101, 6

Conread position: 35-198
Cow position: chr5:27652052-27651890 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 134
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 101, 10

Conread position: 35-198
Cow position: chr5:29009285-29009445 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 135
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 77, 6

Conread position: 35-198
Cow position: chr5:34202865-34203027 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 101, 6

Conread position: 35-198
Cow position: chr5:41550997-41550834 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 94, 6

Conread position: 35-198
Cow position: chr5:49182198-49182361 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 134
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 96, 32

Conread position: 35-217
Cow position: chr5:41962308-41962127 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 156
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 6

Conread position: 35-271
Cow position: chr5:25000714-25000475 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 100, 45

Conread position: 35-378
Cow position: chr5:49593525-49593174 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 6

Conread position: 36-185
Cow position: chr5:12644009-12643864 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 101, 45

Conread position: 37-184
Cow position: chr5:14380094-14380240 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 99, 44

Conread position: 37-191
Cow position: chr5:28031408-28031563 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 101, 44

Conread position: 40-171
Cow position: chr5:24330208-24330339 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 114
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 76, 44

Conread position: 40-198
Cow position: chr5:9686494-9686335 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 89, 43

Conread position: 40-198
Cow position: chr5:45700200-45700358 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 129
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 96, 41

Conread position: 40-210
Cow position: chr5:17774106-17773935 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 95, 41

Conread position: 41-155
Cow position: chr5:61273252-61273138 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 98
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 95, 40

Conread position: 41-165
Cow position: chr5:10918733-10918857 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 41-170
Cow position: chr5:34696537-34696667 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 113
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-171
Cow position: chr5:48808780-48808650 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 95, 40

Conread position: 41-171
Cow position: chr5:54792700-54792570 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 41-178
Cow position: chr5:30579257-30579393 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 39

Conread position: 41-178
Cow position: chr5:64782083-64781946 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 41-183
Cow position: chr5:2430197-2430055 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 95, 40

Conread position: 41-183
Cow position: chr5:23960380-23960238 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-183
Cow position: chr5:54932283-54932141 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 95, 36

Conread position: 41-184
Cow position: chr5:415787-415644 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr5:2914386-2914526 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr5:29042446-29042589 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 121
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr5:37732281-37732424 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr5:46663938-46664081 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 95, 39

Conread position: 41-184
Cow position: chr5:49518593-49518736 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr5:73489626-73489483 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 41-192
Cow position: chr5:27909337-27909186 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-194
Cow position: chr5:32673805-32673652 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 131
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 95, 40

Conread position: 41-195
Cow position: chr5:27001544-27001696 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 41-197
Cow position: chr5:9042973-9043129 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 128
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 95, 39

Conread position: 41-197
Cow position: chr5:24576850-24577006 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr5:44459418-44459574 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr5:48468344-48468188 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 129
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr5:59482189-59482344 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 95, 40

Conread position: 41-198
Cow position: chr5:39164865-39164708 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 128
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 95, 40

Conread position: 41-198
Cow position: chr5:49119346-49119189 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 42

Conread position: 41-199
Cow position: chr5:4019263-4019101 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-199
Cow position: chr5:26079283-26079124 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 130
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 95, 40

Conread position: 41-199
Cow position: chr5:31706509-31706671 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 134
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 95, 40

Conread position: 41-199
Cow position: chr5:32772417-32772579 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 135
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 93, 40

Conread position: 41-199
Cow position: chr5:45182168-45182006 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 137
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 95, 40

Conread position: 41-199
Cow position: chr5:58195937-58196099 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 94, 40

Conread position: 41-205
Cow position: chr5:46644622-46644789 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 95, 43

Conread position: 41-214
Cow position: chr5:18271543-18271714 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 74, 39

Conread position: 41-218
Cow position: chr5:6589086-6588902 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 145
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 66, 45

Conread position: 41-218
Cow position: chr5:10776329-10776146 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 95, 40

Conread position: 41-218
Cow position: chr5:10843484-10843301 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 95, 39

Conread position: 41-218
Cow position: chr5:46738650-46738476 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 96, 40

Conread position: 41-218
Cow position: chr5:47831176-47830995 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 141
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 145, 40

Conread position: 41-224
Cow position: chr5:46776014-46776203 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 7, 41

Conread position: 41-224
Cow position: chr5:59060553-59060742 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 95, 40

Conread position: 41-238
Cow position: chr5:57482611-57482414 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 95, 40

Conread position: 41-258
Cow position: chr5:41529658-41529428 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 183
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 96, 40

Conread position: 41-270
Cow position: chr5:27489182-27489422 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 94, 38

Conread position: 41-270
Cow position: chr5:52433902-52434141 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 126, 40

Conread position: 41-432
Cow position: chr5:46659650-46660051 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 40

Conread position: 43-184
Cow position: chr5:2531208-2531349 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 120
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 93, 38

Conread position: 43-218
Cow position: chr5:23228168-23228340 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 43-219
Cow position: chr5:3964401-3964571 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 143, 38

Conread position: 45-218
Cow position: chr5:51162838-51163010 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 91, 36

Conread position: 47-184
Cow position: chr5:55627928-55628064 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 89, 34

Conread position: 47-198
Cow position: chr5:20972104-20971954 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 127
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 90, 34

Conread position: 47-223
Cow position: chr5:27682803-27682622 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 83, 33

Conread position: 52-278
Cow position: chr5:27059178-27058939 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 85, 29

Conread position: 52-278
Cow position: chr5:27060081-27059842 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 85, 29

Conread position: 53-169
Cow position: chr5:31101667-31101548 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 30

Conread position: 65-199
Cow position: chr5:18665953-18666089 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 69, 16

Conread position: 67-198
Cow position: chr5:6611972-6612103 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 69, 14

Conread position: 67-434
Cow position: chr5:40053420-40053777 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 14

Conread position: 68-198
Cow position: chr5:4385210-4385338 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 72-184
Cow position: chr5:18122502-18122390 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 9

Conread position: 72-197
Cow position: chr5:10482814-10482939 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 64, 9

Conread position: 86-197
Cow position: chr5:4089050-4089162 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 89-184
Cow position: chr5:35299835-35299931 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 84
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 90-197
Cow position: chr5:56145038-56144930 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 168-367
Cow position: chr5:61272800-61272597 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 27, 146

Conread position: 223-432
Cow position: chr5:41962148-41961929 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 6

Conread position: 276-434
Cow position: chr5:39247141-39246983 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 129, 49

Conread position: 305-432
Cow position: chr5:41528880-41528752 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 64, 19

Show alignments to all cow chromosomes.