Cow genome map
| Conread name: | rpgl15_e18.y1 | 
| Conread position: | 23-235 | 
| Cow position: | chr6:20561052-20560841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 113, 25 | 
| Conread position: | 26-184 | 
| Cow position: | chr6:8201800-8201957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 110, 15 | 
| Conread position: | 26-255 | 
| Cow position: | chr6:27529944-27529717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 110, 15 | 
| Conread position: | 33-278 | 
| Cow position: | chr6:35420537-35420286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 5e-36 | 
| Alignm gaps (pig, cow): | 11, 24 | 
| Conread position: | 35-181 | 
| Cow position: | chr6:66231864-66232011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 7e-28 | 
| Alignm gaps (pig, cow): | 67, 45 | 
| Conread position: | 35-185 | 
| Cow position: | chr6:65007760-65007907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 101, 6 | 
| Conread position: | 35-197 | 
| Cow position: | chr6:40315124-40315277 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 35-198 | 
| Cow position: | chr6:19453989-19454149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 5e-36 | 
| Alignm gaps (pig, cow): | 101, 6 | 
| Conread position: | 35-198 | 
| Cow position: | chr6:65928007-65928170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 101, 46 | 
| Conread position: | 35-199 | 
| Cow position: | chr6:10558588-10558425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 101, 6 | 
| Conread position: | 35-217 | 
| Cow position: | chr6:13276872-13277056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 101, 10 | 
| Conread position: | 40-432 | 
| Cow position: | chr6:43608282-43607887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 41 | 
| Conread position: | 41-165 | 
| Cow position: | chr6:5951169-5951045 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 6e-27 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-165 | 
| Cow position: | chr6:28275059-28275183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-177 | 
| Cow position: | chr6:25214335-25214470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 94, 49 | 
| Conread position: | 41-178 | 
| Cow position: | chr6:6566682-6566819 (view UCSC Genome Browser custom track) | 
| Alignm length: | 139 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 96, 40 | 
| Conread position: | 41-178 | 
| Cow position: | chr6:17046132-17046269 (view UCSC Genome Browser custom track) | 
| Alignm length: | 139 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-178 | 
| Cow position: | chr6:64715306-64715443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 139 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:2374777-2374920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:2554783-2554926 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 95, 42 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:3277873-3277730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:13104135-13104278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 6e-37 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:13847112-13847252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:16051957-16052100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:24239142-24239285 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:27169654-27169801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 64, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:28491437-28491294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:30275101-30274959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 96, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:33459940-33460083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 94, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:34127430-34127573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:34892929-34892786 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 94, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:35876641-35876498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 96, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:40251740-40251883 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 95, 45 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:55544250-55544107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-184 | 
| Cow position: | chr6:58408835-58408692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-191 | 
| Cow position: | chr6:65822049-65821898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-197 | 
| Cow position: | chr6:7866674-7866518 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 96, 40 | 
| Conread position: | 41-197 | 
| Cow position: | chr6:28063413-28063571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-198 | 
| Cow position: | chr6:27469328-27469481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 95, 37 | 
| Conread position: | 41-198 | 
| Cow position: | chr6:29311568-29311725 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 95, 39 | 
| Conread position: | 41-198 | 
| Cow position: | chr6:65880944-65881101 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-199 | 
| Cow position: | chr6:44029120-44029278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 6e-27 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-200 | 
| Cow position: | chr6:3488321-3488163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-214 | 
| Cow position: | chr6:32330713-32330544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 41-215 | 
| Cow position: | chr6:65841661-65841834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-217 | 
| Cow position: | chr6:40554509-40554334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 8e-29 | 
| Alignm gaps (pig, cow): | 96, 40 | 
| Conread position: | 41-218 | 
| Cow position: | chr6:1405161-1404978 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-218 | 
| Cow position: | chr6:1411863-1411680 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-218 | 
| Cow position: | chr6:3149081-3149264 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 6e-37 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-218 | 
| Cow position: | chr6:13943986-13944167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 5e-36 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-218 | 
| Cow position: | chr6:26670781-26670598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 6e-37 | 
| Alignm gaps (pig, cow): | 96, 40 | 
| Conread position: | 41-218 | 
| Cow position: | chr6:44150479-44150297 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-218 | 
| Cow position: | chr6:65899826-65899647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 61, 40 | 
| Conread position: | 41-218 | 
| Cow position: | chr6:68026869-68027052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 7e-38 | 
| Alignm gaps (pig, cow): | 95, 40 | 
| Conread position: | 41-243 | 
| Cow position: | chr6:30479176-30479380 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 8.99998e-41 | 
| Alignm gaps (pig, cow): | 96, 40 | 
| Conread position: | 41-270 | 
| Cow position: | chr6:7179619-7179383 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 92, 40 | 
| Conread position: | 41-304 | 
| Cow position: | chr6:10641237-10641509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 42 | 
| Conread position: | 41-385 | 
| Cow position: | chr6:38232354-38232706 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 40 | 
| Conread position: | 41-434 | 
| Cow position: | chr6:37116216-37116602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 28 | 
| Conread position: | 42-199 | 
| Cow position: | chr6:331390-331230 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 94, 30 | 
| Conread position: | 43-199 | 
| Cow position: | chr6:39908606-39908766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 93, 38 | 
| Conread position: | 44-184 | 
| Cow position: | chr6:15141100-15140960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 92, 37 | 
| Conread position: | 44-184 | 
| Cow position: | chr6:15280472-15280332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 8e-29 | 
| Alignm gaps (pig, cow): | 92, 37 | 
| Conread position: | 44-198 | 
| Cow position: | chr6:28105764-28105612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 6e-27 | 
| Alignm gaps (pig, cow): | 94, 31 | 
| Conread position: | 44-199 | 
| Cow position: | chr6:17598199-17598040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 5e-36 | 
| Alignm gaps (pig, cow): | 92, 37 | 
| Conread position: | 47-178 | 
| Cow position: | chr6:913725-913867 (view UCSC Genome Browser custom track) | 
| Alignm length: | 144 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 90, 34 | 
| Conread position: | 47-178 | 
| Cow position: | chr6:8761221-8761091 (view UCSC Genome Browser custom track) | 
| Alignm length: | 133 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 90, 34 | 
| Conread position: | 47-198 | 
| Cow position: | chr6:36526126-36526280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 16, 37 | 
| Conread position: | 47-199 | 
| Cow position: | chr6:43617798-43617954 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 89, 36 | 
| Conread position: | 47-218 | 
| Cow position: | chr6:7141403-7141227 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 89, 34 | 
| Conread position: | 48-178 | 
| Cow position: | chr6:3889395-3889265 (view UCSC Genome Browser custom track) | 
| Alignm length: | 132 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 88, 33 | 
| Conread position: | 48-218 | 
| Cow position: | chr6:59919201-59919029 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 88, 33 | 
| Conread position: | 49-278 | 
| Cow position: | chr6:59740973-59740734 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 88, 32 | 
| Conread position: | 52-171 | 
| Cow position: | chr6:33388926-33389048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 124 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 85, 29 | 
| Conread position: | 57-159 | 
| Cow position: | chr6:9738793-9738895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 104 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 79, 24 | 
| Conread position: | 60-224 | 
| Cow position: | chr6:1822544-1822380 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 6e-27 | 
| Alignm gaps (pig, cow): | 76, 21 | 
| Conread position: | 61-178 | 
| Cow position: | chr6:58026855-58026971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 119 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 75, 16 | 
| Conread position: | 62-238 | 
| Cow position: | chr6:47043101-47042925 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 74, 19 | 
| Conread position: | 64-197 | 
| Cow position: | chr6:10499624-10499491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 135 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 72, 17 | 
| Conread position: | 65-391 | 
| Cow position: | chr6:6476388-6476063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 16 | 
| Conread position: | 66-198 | 
| Cow position: | chr6:52693125-52693257 (view UCSC Genome Browser custom track) | 
| Alignm length: | 134 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 70, 15 | 
| Conread position: | 68-198 | 
| Cow position: | chr6:12650845-12650715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 132 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 70, 13 | 
| Conread position: | 80-197 | 
| Cow position: | chr6:65914328-65914445 (view UCSC Genome Browser custom track) | 
| Alignm length: | 119 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 53, 91 | 
| Conread position: | 86-184 | 
| Cow position: | chr6:40275209-40275308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 100 | 
| Alignm identity: | 84 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 87-218 | 
| Cow position: | chr6:49520197-49520063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 136 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 1e-20 | 
| Alignm gaps (pig, cow): | 50, 25 | 
| Conread position: | 91-197 | 
| Cow position: | chr6:24323255-24323148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 108 | 
| Alignm identity: | 87 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 257-434 | 
| Cow position: | chr6:35419849-35419674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 138, 26 | 
Show alignments to all cow chromosomes.
