Cow genome map

Conread name: rpgl15_e18.y1

Conread position: 23-235
Cow position: chr6:20561052-20560841 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 113, 25

Conread position: 26-184
Cow position: chr6:8201800-8201957 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 110, 15

Conread position: 26-255
Cow position: chr6:27529944-27529717 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 110, 15

Conread position: 33-278
Cow position: chr6:35420537-35420286 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 11, 24

Conread position: 35-181
Cow position: chr6:66231864-66232011 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 67, 45

Conread position: 35-185
Cow position: chr6:65007760-65007907 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 126
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 101, 6

Conread position: 35-197
Cow position: chr6:40315124-40315277 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 35-198
Cow position: chr6:19453989-19454149 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 135
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 101, 6

Conread position: 35-198
Cow position: chr6:65928007-65928170 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 101, 46

Conread position: 35-199
Cow position: chr6:10558588-10558425 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 133
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 101, 6

Conread position: 35-217
Cow position: chr6:13276872-13277056 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 101, 10

Conread position: 40-432
Cow position: chr6:43608282-43607887 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 41

Conread position: 41-165
Cow position: chr6:5951169-5951045 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 95, 40

Conread position: 41-165
Cow position: chr6:28275059-28275183 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 95, 40

Conread position: 41-177
Cow position: chr6:25214335-25214470 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 94, 49

Conread position: 41-178
Cow position: chr6:6566682-6566819 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 96, 40

Conread position: 41-178
Cow position: chr6:17046132-17046269 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 95, 40

Conread position: 41-178
Cow position: chr6:64715306-64715443 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr6:2374777-2374920 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 121
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr6:2554783-2554926 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 95, 42

Conread position: 41-184
Cow position: chr6:3277873-3277730 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr6:13104135-13104278 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 123
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr6:13847112-13847252 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr6:16051957-16052100 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 121
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr6:24239142-24239285 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr6:27169654-27169801 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 121
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 64, 40

Conread position: 41-184
Cow position: chr6:28491437-28491294 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 120
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr6:30275101-30274959 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 96, 40

Conread position: 41-184
Cow position: chr6:33459940-33460083 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 94, 40

Conread position: 41-184
Cow position: chr6:34127430-34127573 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr6:34892929-34892786 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 94, 40

Conread position: 41-184
Cow position: chr6:35876641-35876498 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 96, 40

Conread position: 41-184
Cow position: chr6:40251740-40251883 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 95, 45

Conread position: 41-184
Cow position: chr6:55544250-55544107 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr6:58408835-58408692 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 120
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 95, 40

Conread position: 41-191
Cow position: chr6:65822049-65821898 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr6:7866674-7866518 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 129
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 96, 40

Conread position: 41-197
Cow position: chr6:28063413-28063571 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 95, 40

Conread position: 41-198
Cow position: chr6:27469328-27469481 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 95, 37

Conread position: 41-198
Cow position: chr6:29311568-29311725 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 95, 39

Conread position: 41-198
Cow position: chr6:65880944-65881101 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-199
Cow position: chr6:44029120-44029278 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 95, 40

Conread position: 41-200
Cow position: chr6:3488321-3488163 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 40

Conread position: 41-214
Cow position: chr6:32330713-32330544 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 40, 0

Conread position: 41-215
Cow position: chr6:65841661-65841834 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 95, 40

Conread position: 41-217
Cow position: chr6:40554509-40554334 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 96, 40

Conread position: 41-218
Cow position: chr6:1405161-1404978 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 95, 40

Conread position: 41-218
Cow position: chr6:1411863-1411680 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 95, 40

Conread position: 41-218
Cow position: chr6:3149081-3149264 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 148
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 95, 40

Conread position: 41-218
Cow position: chr6:13943986-13944167 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 95, 40

Conread position: 41-218
Cow position: chr6:26670781-26670598 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 148
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 96, 40

Conread position: 41-218
Cow position: chr6:44150479-44150297 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 95, 40

Conread position: 41-218
Cow position: chr6:65899826-65899647 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 40

Conread position: 41-218
Cow position: chr6:68026869-68027052 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 149
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 95, 40

Conread position: 41-243
Cow position: chr6:30479176-30479380 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 159
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 96, 40

Conread position: 41-270
Cow position: chr6:7179619-7179383 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 92, 40

Conread position: 41-304
Cow position: chr6:10641237-10641509 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 42

Conread position: 41-385
Cow position: chr6:38232354-38232706 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 40

Conread position: 41-434
Cow position: chr6:37116216-37116602 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 28

Conread position: 42-199
Cow position: chr6:331390-331230 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 94, 30

Conread position: 43-199
Cow position: chr6:39908606-39908766 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 134
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 93, 38

Conread position: 44-184
Cow position: chr6:15141100-15140960 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 92, 37

Conread position: 44-184
Cow position: chr6:15280472-15280332 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 92, 37

Conread position: 44-198
Cow position: chr6:28105764-28105612 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 94, 31

Conread position: 44-199
Cow position: chr6:17598199-17598040 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 133
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 92, 37

Conread position: 47-178
Cow position: chr6:913725-913867 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 90, 34

Conread position: 47-178
Cow position: chr6:8761221-8761091 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 90, 34

Conread position: 47-198
Cow position: chr6:36526126-36526280 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 37

Conread position: 47-199
Cow position: chr6:43617798-43617954 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 89, 36

Conread position: 47-218
Cow position: chr6:7141403-7141227 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 141
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 89, 34

Conread position: 48-178
Cow position: chr6:3889395-3889265 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 110
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 88, 33

Conread position: 48-218
Cow position: chr6:59919201-59919029 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 88, 33

Conread position: 49-278
Cow position: chr6:59740973-59740734 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 88, 32

Conread position: 52-171
Cow position: chr6:33388926-33389048 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 85, 29

Conread position: 57-159
Cow position: chr6:9738793-9738895 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 90
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 79, 24

Conread position: 60-224
Cow position: chr6:1822544-1822380 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 76, 21

Conread position: 61-178
Cow position: chr6:58026855-58026971 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 16

Conread position: 62-238
Cow position: chr6:47043101-47042925 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 74, 19

Conread position: 64-197
Cow position: chr6:10499624-10499491 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 72, 17

Conread position: 65-391
Cow position: chr6:6476388-6476063 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 16

Conread position: 66-198
Cow position: chr6:52693125-52693257 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 70, 15

Conread position: 68-198
Cow position: chr6:12650845-12650715 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 70, 13

Conread position: 80-197
Cow position: chr6:65914328-65914445 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 91

Conread position: 86-184
Cow position: chr6:40275209-40275308 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 87-218
Cow position: chr6:49520197-49520063 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 50, 25

Conread position: 91-197
Cow position: chr6:24323255-24323148 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 257-434
Cow position: chr6:35419849-35419674 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 138, 26

Show alignments to all cow chromosomes.