Cow genome map

Conread name: rpgl15_e18.y1

Conread position: 30-219
Cow position: chr7:68478598-68478786 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 106, 42

Conread position: 33-165
Cow position: chr7:33878211-33878080 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 103, 8

Conread position: 33-165
Cow position: chr7:62679510-62679382 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 33-198
Cow position: chr7:68232100-68232264 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 104, 8

Conread position: 33-210
Cow position: chr7:68907985-68908163 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 144
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 9, 47

Conread position: 35-153
Cow position: chr7:36085498-36085614 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 35-168
Cow position: chr7:41869784-41869652 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 114
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 83, 6

Conread position: 35-183
Cow position: chr7:994397-994539 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 102, 13

Conread position: 35-184
Cow position: chr7:33406080-33405932 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 101, 28

Conread position: 35-198
Cow position: chr7:35297109-35296944 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 135
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 101, 6

Conread position: 35-198
Cow position: chr7:41490273-41490433 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 134
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 102, 6

Conread position: 35-198
Cow position: chr7:63385501-63385664 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 101, 46

Conread position: 35-198
Cow position: chr7:67417206-67417366 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 101, 6

Conread position: 35-198
Cow position: chr7:68479328-68479491 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 101, 46

Conread position: 35-199
Cow position: chr7:52119923-52119760 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 101, 6

Conread position: 35-259
Cow position: chr7:58993355-58993585 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 156
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 100, 46

Conread position: 35-306
Cow position: chr7:35287398-35287118 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 58, 19

Conread position: 35-378
Cow position: chr7:68777991-68777653 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 6

Conread position: 35-430
Cow position: chr7:29470285-29470684 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 6

Conread position: 35-432
Cow position: chr7:29370421-29370032 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 6

Conread position: 35-432
Cow position: chr7:53990914-53991310 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 6

Conread position: 37-175
Cow position: chr7:1357523-1357385 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 118
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 95, 44

Conread position: 40-360
Cow position: chr7:24934798-24934476 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 20

Conread position: 41-165
Cow position: chr7:27786790-27786912 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 95, 40

Conread position: 41-174
Cow position: chr7:34149265-34149398 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 95, 39

Conread position: 41-175
Cow position: chr7:54603018-54603152 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 91, 40

Conread position: 41-178
Cow position: chr7:10431251-10431114 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 95, 42

Conread position: 41-178
Cow position: chr7:45948983-45948848 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 95, 38

Conread position: 41-183
Cow position: chr7:24808300-24808158 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 96, 40

Conread position: 41-183
Cow position: chr7:34486080-34486223 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 95, 0

Conread position: 41-184
Cow position: chr7:1372485-1372342 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 94, 40

Conread position: 41-184
Cow position: chr7:6642710-6642567 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr7:7257362-7257503 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 41-184
Cow position: chr7:8145077-8144934 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr7:14139434-14139291 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr7:20515605-20515462 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 96, 40

Conread position: 41-184
Cow position: chr7:20528508-20528365 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 96, 40

Conread position: 41-184
Cow position: chr7:20555881-20556024 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr7:20799275-20799136 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr7:21985566-21985709 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr7:39791922-39792065 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr7:46901913-46901771 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 96, 42

Conread position: 41-184
Cow position: chr7:60463316-60463459 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 121
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr7:64241781-64241638 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr7:67799018-67799161 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 96, 42

Conread position: 41-185
Cow position: chr7:48633547-48633690 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 95, 23

Conread position: 41-191
Cow position: chr7:1449651-1449800 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr7:16705-16549 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr7:21320323-21320479 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr7:23815803-23815647 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr7:43830858-43830702 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr7:61559380-61559536 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 130
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 95, 40

Conread position: 41-198
Cow position: chr7:446464-446307 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 95, 40

Conread position: 41-198
Cow position: chr7:5183572-5183729 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 127
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 92, 40

Conread position: 41-199
Cow position: chr7:3300987-3300829 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 132
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 96, 40

Conread position: 41-199
Cow position: chr7:11466571-11466410 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 95, 29

Conread position: 41-217
Cow position: chr7:52804542-52804374 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 163, 40

Conread position: 41-218
Cow position: chr7:1611044-1610867 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 95, 45

Conread position: 41-218
Cow position: chr7:6648488-6648306 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 147
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 95, 40

Conread position: 41-218
Cow position: chr7:11446722-11446906 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 27, 41

Conread position: 41-218
Cow position: chr7:25439673-25439860 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 95, 40

Conread position: 41-224
Cow position: chr7:3234516-3234327 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 95, 40

Conread position: 41-238
Cow position: chr7:13537416-13537220 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 96, 40

Conread position: 41-238
Cow position: chr7:55537750-55537557 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 41-239
Cow position: chr7:5662541-5662738 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 41-244
Cow position: chr7:41487721-41487927 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 145
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 75, 40

Conread position: 41-252
Cow position: chr7:21310372-21310593 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 175
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 96, 40

Conread position: 41-260
Cow position: chr7:49290828-49291058 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 96, 40

Conread position: 41-278
Cow position: chr7:1400193-1399949 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 92, 40

Conread position: 41-278
Cow position: chr7:63021015-63021254 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 97, 40

Conread position: 41-322
Cow position: chr7:68857947-68857666 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 41

Conread position: 41-385
Cow position: chr7:3154933-3155294 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 42

Conread position: 42-267
Cow position: chr7:27540196-27539961 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 95, 39

Conread position: 42-278
Cow position: chr7:55280635-55280390 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 93, 32

Conread position: 43-271
Cow position: chr7:39555927-39555689 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 94, 38

Conread position: 47-178
Cow position: chr7:21127489-21127359 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 34

Conread position: 47-184
Cow position: chr7:21234839-21234702 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 82, 34

Conread position: 47-198
Cow position: chr7:21929317-21929466 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 89, 22

Conread position: 47-432
Cow position: chr7:39108067-39107686 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 39

Conread position: 47-432
Cow position: chr7:51014125-51014504 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 37

Conread position: 48-278
Cow position: chr7:47050857-47051098 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 184
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 89, 33

Conread position: 53-218
Cow position: chr7:27147429-27147594 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 83, 14

Conread position: 60-405
Cow position: chr7:54196071-54195729 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 21

Conread position: 74-198
Cow position: chr7:21975546-21975423 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 105
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 63, 7

Conread position: 117-278
Cow position: chr7:6489096-6488923 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 20, 0

Show alignments to all cow chromosomes.