Cow genome map

Conread name: rpgl15_e18.y1

Conread position: 23-183
Cow position: chr8:19330073-19330232 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 113, 18

Conread position: 32-178
Cow position: chr8:60060728-60060870 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 32-278
Cow position: chr8:47672817-47673072 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 9

Conread position: 35-165
Cow position: chr8:27983446-27983319 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 101, 10

Conread position: 35-168
Cow position: chr8:47885383-47885510 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 6, 0

Conread position: 35-184
Cow position: chr8:47661977-47661828 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 101, 46

Conread position: 35-185
Cow position: chr8:42759292-42759442 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 126
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 101, 46

Conread position: 35-191
Cow position: chr8:11821661-11821817 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 134
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 101, 46

Conread position: 35-197
Cow position: chr8:11761628-11761789 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 102, 26

Conread position: 35-198
Cow position: chr8:44036430-44036267 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 84, 10

Conread position: 35-210
Cow position: chr8:47670809-47670973 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 35-218
Cow position: chr8:17311366-17311551 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 101, 46

Conread position: 35-430
Cow position: chr8:42161377-42160991 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 6

Conread position: 35-432
Cow position: chr8:11970242-11969848 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 6

Conread position: 35-432
Cow position: chr8:33430272-33430676 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 6

Conread position: 36-218
Cow position: chr8:22571946-22571758 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 100, 45

Conread position: 36-218
Cow position: chr8:51667947-51667764 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 144
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 100, 47

Conread position: 38-217
Cow position: chr8:11832051-11832230 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 98, 43

Conread position: 39-434
Cow position: chr8:44693636-44694036 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 42

Conread position: 40-158
Cow position: chr8:61066893-61066775 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 98, 41

Conread position: 40-198
Cow position: chr8:23217113-23217271 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 132
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 97, 43

Conread position: 40-198
Cow position: chr8:32930863-32931021 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 136
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 94, 41

Conread position: 40-198
Cow position: chr8:46600647-46600805 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 128
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 97, 41

Conread position: 40-218
Cow position: chr8:45448810-45448988 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 68, 40

Conread position: 40-240
Cow position: chr8:45316772-45316565 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 162
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 96, 41

Conread position: 40-431
Cow position: chr8:61035015-61034597 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 41

Conread position: 41-156
Cow position: chr8:8910575-8910690 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 99
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 42

Conread position: 41-163
Cow position: chr8:14928639-14928517 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 95, 40

Conread position: 41-171
Cow position: chr8:14591548-14591418 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 41-171
Cow position: chr8:25522755-25522885 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 95, 40

Conread position: 41-178
Cow position: chr8:5016535-5016672 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 95, 40

Conread position: 41-178
Cow position: chr8:23770989-23771126 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 40

Conread position: 41-178
Cow position: chr8:24915983-24915846 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 115
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-183
Cow position: chr8:34348033-34348174 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 95, 28

Conread position: 41-184
Cow position: chr8:6065414-6065271 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 123
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr8:8556794-8556651 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 120
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr8:10743276-10743133 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr8:10748729-10748872 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 122
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr8:27578756-27578899 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 122
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr8:32319195-32319052 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr8:32631672-32631530 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 122
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 95, 13

Conread position: 41-184
Cow position: chr8:39195862-39195720 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 95, 41

Conread position: 41-184
Cow position: chr8:42484266-42484409 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 96, 40

Conread position: 41-184
Cow position: chr8:44244219-44244076 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr8:47069451-47069308 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 120
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 95, 40

Conread position: 41-184
Cow position: chr8:49214781-49214924 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 39

Conread position: 41-184
Cow position: chr8:50288797-50288654 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 96, 40

Conread position: 41-184
Cow position: chr8:50994142-50994285 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 41-185
Cow position: chr8:42420211-42420066 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 125
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 95, 40

Conread position: 41-193
Cow position: chr8:21158464-21158312 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 128
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 95, 40

Conread position: 41-194
Cow position: chr8:50934455-50934608 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 95, 39

Conread position: 41-195
Cow position: chr8:45189438-45189592 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 128
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 96, 40

Conread position: 41-197
Cow position: chr8:8655864-8655708 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 131
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 95, 40

Conread position: 41-197
Cow position: chr8:9275365-9275521 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 132
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 95, 40

Conread position: 41-198
Cow position: chr8:2171025-2170868 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 95, 40

Conread position: 41-198
Cow position: chr8:8229427-8229270 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 95, 40

Conread position: 41-198
Cow position: chr8:19050830-19050989 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 90, 40

Conread position: 41-198
Cow position: chr8:25776319-25776162 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 95, 40

Conread position: 41-198
Cow position: chr8:27925669-27925826 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 131
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 94, 40

Conread position: 41-198
Cow position: chr8:46944566-46944408 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 67, 40

Conread position: 41-198
Cow position: chr8:59262539-59262382 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 96, 40

Conread position: 41-199
Cow position: chr8:8518228-8518067 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 133
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 95, 26

Conread position: 41-213
Cow position: chr8:1153953-1153782 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 137
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 95, 40

Conread position: 41-218
Cow position: chr8:1319399-1319582 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 151
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 95, 40

Conread position: 41-218
Cow position: chr8:9735601-9735784 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 150
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 95, 40

Conread position: 41-218
Cow position: chr8:26005243-26005059 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 51, 23

Conread position: 41-219
Cow position: chr8:4686747-4686921 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 95, 40

Conread position: 41-235
Cow position: chr8:3785064-3785258 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 95, 38

Conread position: 41-278
Cow position: chr8:25542856-25543103 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 193
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 47, 39

Conread position: 41-420
Cow position: chr8:16083682-16084090 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 284
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 95, 40

Conread position: 41-430
Cow position: chr8:38607170-38606777 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 40

Conread position: 41-432
Cow position: chr8:24420179-24419775 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 19

Conread position: 41-433
Cow position: chr8:45161021-45160619 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 37

Conread position: 43-168
Cow position: chr8:9540137-9540015 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 43-199
Cow position: chr8:2886107-2886267 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 132
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 94, 38

Conread position: 43-218
Cow position: chr8:45693273-45693095 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 86, 38

Conread position: 44-184
Cow position: chr8:3856657-3856519 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 92, 37

Conread position: 44-184
Cow position: chr8:12449305-12449445 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 92, 37

Conread position: 44-435
Cow position: chr8:58187142-58186773 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 279
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 172, 37

Conread position: 45-218
Cow position: chr8:11056224-11056397 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 91, 36

Conread position: 47-171
Cow position: chr8:38390728-38390852 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 89, 34

Conread position: 47-184
Cow position: chr8:33588734-33588871 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 89, 34

Conread position: 47-197
Cow position: chr8:1348875-1348725 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 89, 34

Conread position: 47-197
Cow position: chr8:45797955-45797805 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 90, 34

Conread position: 47-197
Cow position: chr8:47074629-47074778 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 89, 20

Conread position: 49-238
Cow position: chr8:36636181-36635993 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 87, 32

Conread position: 52-432
Cow position: chr8:44076522-44076147 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 29

Conread position: 54-170
Cow position: chr8:7160871-7160987 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 82, 27

Conread position: 93-197
Cow position: chr8:6683852-6683957 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 235-398
Cow position: chr8:1117452-1117615 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 87

Show alignments to all cow chromosomes.