Cow genome map

Conread name: rpigca0_001979.y1

Conread position: 1-228
Cow position: chr12:9886349-9886578 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 183
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 14, 162

Conread position: 1-235
Cow position: chr12:21579127-21579362 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 48, 159

Conread position: 1-235
Cow position: chr12:27986980-27987220 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 56, 123

Conread position: 1-268
Cow position: chr12:1408491-1408226 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 205
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 49, 152

Conread position: 1-294
Cow position: chr12:8673791-8674085 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 160

Conread position: 1-299
Cow position: chr12:25260094-25260391 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-299
Cow position: chr12:47415459-47415167 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 110

Conread position: 1-303
Cow position: chr12:37697818-37698116 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 85

Conread position: 1-306
Cow position: chr12:28707967-28708268 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 133

Conread position: 1-311
Cow position: chr12:2511739-2512039 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-316
Cow position: chr12:6404129-6404441 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-319
Cow position: chr12:20218154-20217838 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 159

Conread position: 1-320
Cow position: chr12:22286277-22286592 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 114

Conread position: 1-322
Cow position: chr12:5800438-5800120 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 159

Conread position: 1-322
Cow position: chr12:5905183-5904872 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 63

Conread position: 1-322
Cow position: chr12:27851996-27852310 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-322
Cow position: chr12:29485012-29485320 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 245
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 85, 43

Conread position: 1-322
Cow position: chr12:38774734-38774433 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 1-322
Cow position: chr12:40867991-40867673 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-323
Cow position: chr12:27929068-27929395 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-326
Cow position: chr12:44766487-44766167 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 156

Conread position: 1-372
Cow position: chr12:35135950-35135580 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 261
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 63, 132

Conread position: 1-409
Cow position: chr12:23441275-23441702 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 301
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 48, 104

Conread position: 1-412
Cow position: chr12:21946639-21946231 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 301
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 49, 138

Conread position: 1-460
Cow position: chr12:22202023-22202495 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-460
Cow position: chr12:28763357-28763827 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-467
Cow position: chr12:34177213-34176734 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 159

Conread position: 1-487
Cow position: chr12:21313758-21314270 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 90

Conread position: 1-487
Cow position: chr12:32849230-32848727 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 168

Conread position: 1-487
Cow position: chr12:33297287-33296792 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 155

Conread position: 1-487
Cow position: chr12:40306928-40306458 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 163

Conread position: 1-488
Cow position: chr12:17663605-17663121 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 96

Conread position: 1-488
Cow position: chr12:20994097-20994606 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 260

Conread position: 1-488
Cow position: chr12:21905027-21904525 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 36

Conread position: 1-489
Cow position: chr12:1774249-1774761 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 133

Conread position: 1-489
Cow position: chr12:3181067-3180572 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 159

Conread position: 1-489
Cow position: chr12:5110409-5110903 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 133

Conread position: 1-489
Cow position: chr12:5713620-5713121 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 160

Conread position: 1-489
Cow position: chr12:11101906-11101405 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position: chr12:15821375-15820889 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 13

Conread position: 1-489
Cow position: chr12:24028825-24029321 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position: chr12:27505992-27506492 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 159

Conread position: 1-489
Cow position: chr12:31328672-31329173 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 122

Conread position: 1-489
Cow position: chr12:41337571-41338075 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 163

Conread position: 1-489
Cow position: chr12:43681662-43681162 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 159

Conread position: 1-489
Cow position: chr12:48416095-48416588 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 53

Conread position: 2-483
Cow position: chr12:4544598-4545043 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 313
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 245, 71

Conread position: 4-270
Cow position: chr12:18421565-18421839 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 82, 178

Conread position: 4-466
Cow position: chr12:12177583-12178055 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 87

Conread position: 4-489
Cow position: chr12:3716621-3717116 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 159

Conread position: 5-464
Cow position: chr12:22480772-22480307 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 81

Conread position: 5-484
Cow position: chr12:249668-250156 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 19

Conread position: 5-489
Cow position: chr12:41973121-41973615 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 92

Conread position: 6-321
Cow position: chr12:10402739-10403049 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 214
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 24

Conread position: 6-353
Cow position: chr12:22975606-22975961 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 246
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 42, 157

Conread position: 6-487
Cow position: chr12:19871884-19871371 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 44

Conread position: 8-244
Cow position: chr12:27439033-27439266 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 23

Conread position: 8-293
Cow position: chr12:19868866-19868592 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 262, 39

Conread position: 8-302
Cow position: chr12:5146219-5145918 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 215
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 34, 153

Conread position: 8-322
Cow position: chr12:30142061-30141758 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 224
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 40, 67

Conread position: 8-409
Cow position: chr12:19873207-19872822 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 81

Conread position: 8-431
Cow position: chr12:22687133-22686712 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 303
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 20, 99

Conread position: 8-489
Cow position: chr12:24558221-24557737 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 24

Conread position: 8-489
Cow position: chr12:25313063-25313556 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 65

Conread position: 9-322
Cow position: chr12:6441202-6441498 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 228
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 39, 134

Conread position: 9-446
Cow position: chr12:5226880-5226434 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 151

Conread position: 9-483
Cow position: chr12:21718522-21719014 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 151

Conread position: 9-488
Cow position: chr12:19198666-19198194 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 120

Conread position: 9-489
Cow position: chr12:8841398-8841898 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 158

Conread position: 9-489
Cow position: chr12:22594402-22593922 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 109

Conread position: 11-463
Cow position: chr12:3070510-3070040 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 149

Conread position: 11-489
Cow position: chr12:10931733-10931242 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 148

Conread position: 11-489
Cow position: chr12:15939233-15939704 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 134

Conread position: 11-489
Cow position: chr12:21057067-21057549 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 131

Conread position: 23-489
Cow position: chr12:12754530-12754999 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 137

Conread position: 49-489
Cow position: chr12:27994704-27994258 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 104

Conread position: 51-489
Cow position: chr12:17969564-17969146 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 7

Conread position: 53-378
Cow position: chr12:21557548-21557216 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 33, 102

Conread position: 71-489
Cow position: chr12:18586252-18585830 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 13

Conread position: 72-484
Cow position: chr12:26869670-26870094 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 83

Conread position: 84-300
Cow position: chr12:34103750-34103963 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 113, 65

Conread position: 85-293
Cow position: chr12:6686503-6686302 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 164
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 68, 0

Conread position: 101-477
Cow position: chr12:24206081-24205704 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 52

Conread position: 104-489
Cow position: chr12:36568779-36569187 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 283
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 47, 173

Conread position: 111-489
Cow position: chr12:25096727-25097108 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 42

Conread position: 178-485
Cow position: chr12:28738004-28737687 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 57, 93

Conread position: 180-489
Cow position: chr12:30687222-30686899 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 87

Conread position: 184-420
Cow position: chr12:3094147-3094397 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 111, 82

Conread position: 196-489
Cow position: chr12:47803616-47803329 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 212
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 142, 70

Conread position: 201-401
Cow position: chr12:19862145-19861948 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 104, 65

Conread position: 206-489
Cow position: chr12:32285325-32285044 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 187
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 148, 60

Conread position: 246-488
Cow position: chr12:21862024-21862265 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 180
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 47, 24

Conread position: 250-436
Cow position: chr12:39283107-39283307 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 24

Conread position: 314-489
Cow position: chr12:8674734-8674908 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 72, 45

Conread position: 314-489
Cow position: chr12:27929459-27929634 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 72, 43

Conread position: 314-489
Cow position: chr12:35311586-35311754 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 141
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 76, 41

Conread position: 314-489
Cow position: chr12:42232642-42232467 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 72, 43

Conread position: 321-489
Cow position: chr12:21089614-21089782 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 68, 36

Show alignments to all cow chromosomes.