Cow genome map
| Conread name: | rpigca0_001979.y1 |
| Conread position: | 1-241 |
| Cow position: | chr17:11102538-11102791 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 174 |
| Conread position: | 1-268 |
| Cow position: | chr17:17478655-17478390 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 49, 154 |
| Conread position: | 1-307 |
| Cow position: | chr17:19998627-19998324 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 1-322 |
| Cow position: | chr17:923157-922840 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-322 |
| Cow position: | chr17:2034028-2033710 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 1-332 |
| Cow position: | chr17:41014696-41014365 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 152 |
| Conread position: | 1-397 |
| Cow position: | chr17:40802301-40801879 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 189 |
| Conread position: | 1-432 |
| Cow position: | chr17:8450246-8449805 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 154 |
| Conread position: | 1-432 |
| Cow position: | chr17:29083700-29083269 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 128 |
| Conread position: | 1-446 |
| Cow position: | chr17:7615154-7615609 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 328 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 24, 129 |
| Conread position: | 1-450 |
| Cow position: | chr17:2201833-2201371 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-460 |
| Cow position: | chr17:11913215-11913685 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 152 |
| Conread position: | 1-484 |
| Cow position: | chr17:2244537-2245025 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 164 |
| Conread position: | 1-487 |
| Cow position: | chr17:50578-51062 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 1-488 |
| Cow position: | chr17:22563676-22563181 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 154 |
| Conread position: | 1-489 |
| Cow position: | chr17:148444-147957 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr17:1568686-1569179 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 159 |
| Conread position: | 1-489 |
| Cow position: | chr17:1654223-1654727 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 344 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 167 |
| Conread position: | 1-489 |
| Cow position: | chr17:2177510-2177015 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 163 |
| Conread position: | 1-489 |
| Cow position: | chr17:3306121-3305610 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr17:4063865-4063375 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 1-489 |
| Cow position: | chr17:6082032-6081540 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 135 |
| Conread position: | 1-489 |
| Cow position: | chr17:6123319-6122818 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 162 |
| Conread position: | 1-489 |
| Cow position: | chr17:6263390-6262891 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 158 |
| Conread position: | 1-489 |
| Cow position: | chr17:11083604-11084100 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 41 |
| Conread position: | 1-489 |
| Cow position: | chr17:16117941-16118424 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 58 |
| Conread position: | 1-489 |
| Cow position: | chr17:16446946-16447443 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 66 |
| Conread position: | 1-489 |
| Cow position: | chr17:16904115-16903620 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 159 |
| Conread position: | 1-489 |
| Cow position: | chr17:18099541-18100039 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 81 |
| Conread position: | 1-489 |
| Cow position: | chr17:18591936-18591457 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 158 |
| Conread position: | 1-489 |
| Cow position: | chr17:21666535-21666039 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr17:24026450-24026948 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 105 |
| Conread position: | 1-489 |
| Cow position: | chr17:25739832-25739331 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr17:29471966-29471474 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 159 |
| Conread position: | 1-489 |
| Cow position: | chr17:33792614-33792118 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 168 |
| Conread position: | 1-489 |
| Cow position: | chr17:36265746-36266224 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 1-489 |
| Cow position: | chr17:36790594-36790105 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 51 |
| Conread position: | 2-313 |
| Cow position: | chr17:32456914-32457235 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 45, 165 |
| Conread position: | 3-322 |
| Cow position: | chr17:12477399-12477086 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 48, 120 |
| Conread position: | 4-474 |
| Cow position: | chr17:2839545-2839075 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 127 |
| Conread position: | 4-487 |
| Cow position: | chr17:20093631-20094120 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 157 |
| Conread position: | 4-489 |
| Cow position: | chr17:18777303-18777795 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 107 |
| Conread position: | 5-219 |
| Cow position: | chr17:18884844-18885059 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 45, 155 |
| Conread position: | 5-322 |
| Cow position: | chr17:997648-997958 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 5-484 |
| Cow position: | chr17:29156913-29156418 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 155 |
| Conread position: | 5-489 |
| Cow position: | chr17:4211463-4210964 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 5-489 |
| Cow position: | chr17:14243364-14242864 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 179 |
| Conread position: | 7-382 |
| Cow position: | chr17:13725792-13725407 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 153 |
| Conread position: | 8-482 |
| Cow position: | chr17:144689-145156 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 114 |
| Conread position: | 9-375 |
| Cow position: | chr17:979660-980035 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 9-484 |
| Cow position: | chr17:18201251-18200777 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 9-487 |
| Cow position: | chr17:23337532-23338012 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 136 |
| Conread position: | 9-489 |
| Cow position: | chr17:2079156-2078678 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 66 |
| Conread position: | 9-489 |
| Cow position: | chr17:20215608-20215126 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 151 |
| Conread position: | 10-287 |
| Cow position: | chr17:13716776-13717043 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 40, 151 |
| Conread position: | 23-432 |
| Cow position: | chr17:22134709-22134289 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 138 |
| Conread position: | 23-489 |
| Cow position: | chr17:15854247-15853769 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 132 |
| Conread position: | 24-302 |
| Cow position: | chr17:13916334-13916606 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 49-264 |
| Cow position: | chr17:38617121-38616911 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 106 |
| Conread position: | 49-489 |
| Cow position: | chr17:15374865-15374440 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 66 |
| Conread position: | 52-320 |
| Cow position: | chr17:25567677-25567419 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 33, 104 |
| Conread position: | 72-485 |
| Cow position: | chr17:1456920-1457337 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 72-489 |
| Cow position: | chr17:14028887-14029311 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 83 |
| Conread position: | 72-489 |
| Cow position: | chr17:19369908-19369479 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 310 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 84-489 |
| Cow position: | chr17:4635345-4635740 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 9 |
| Conread position: | 87-455 |
| Cow position: | chr17:38829321-38828952 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 18 |
| Conread position: | 108-470 |
| Cow position: | chr17:29041483-29041845 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 184, 44 |
| Conread position: | 111-489 |
| Cow position: | chr17:1672716-1672335 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 42 |
| Conread position: | 115-475 |
| Cow position: | chr17:38629540-38629205 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 269, 38 |
| Conread position: | 156-489 |
| Cow position: | chr17:31233051-31232712 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 110 |
| Conread position: | 159-396 |
| Cow position: | chr17:42313260-42313012 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 138, 19 |
| Conread position: | 160-489 |
| Cow position: | chr17:2583760-2583427 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 15 |
| Conread position: | 180-489 |
| Cow position: | chr17:18198711-18198389 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 148, 86 |
| Conread position: | 186-489 |
| Cow position: | chr17:4085414-4085102 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 136, 61 |
| Conread position: | 198-489 |
| Cow position: | chr17:29950551-29950250 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 72 |
| Conread position: | 201-489 |
| Cow position: | chr17:18242316-18242033 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 133, 70 |
| Conread position: | 204-489 |
| Cow position: | chr17:20055450-20055162 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 99, 47 |
| Conread position: | 206-489 |
| Cow position: | chr17:29897966-29897678 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 117, 39 |
| Conread position: | 240-483 |
| Cow position: | chr17:14871980-14871724 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 251-487 |
| Cow position: | chr17:10270073-10270315 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 57, 19 |
| Conread position: | 264-489 |
| Cow position: | chr17:4570486-4570248 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 327-489 |
| Cow position: | chr17:15364367-15364205 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 37, 111 |
| Conread position: | 341-489 |
| Cow position: | chr17:41014070-41013920 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 370-489 |
| Cow position: | chr17:16464234-16464118 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.