Cow genome map

Conread name: rpigca0_001979.y1

Conread position: 1-244
Cow position:
Alignm length: 251
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 159

Conread position: 1-288
Cow position:
Alignm length: 298
Alignm identity: 219
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 44, 162

Conread position: 1-294
Cow position:
Alignm length: 301
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 13

Conread position: 1-315
Cow position:
Alignm length: 322
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-318
Cow position:
Alignm length: 325
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 1-318
Cow position:
Alignm length: 325
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 26

Conread position: 1-320
Cow position:
Alignm length: 329
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 156

Conread position: 1-322
Cow position:
Alignm length: 329
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 160

Conread position: 1-322
Cow position:
Alignm length: 328
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 158

Conread position: 1-322
Cow position:
Alignm length: 335
Alignm identity: 237
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 49, 186

Conread position: 1-322
Cow position:
Alignm length: 330
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 160

Conread position: 1-325
Cow position:
Alignm length: 333
Alignm identity: 236
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 50, 141

Conread position: 1-326
Cow position:
Alignm length: 337
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 163

Conread position: 1-326
Cow position:
Alignm length: 347
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 90

Conread position: 1-363
Cow position:
Alignm length: 379
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 8

Conread position: 1-379
Cow position:
Alignm length: 401
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 83

Conread position: 1-396
Cow position:
Alignm length: 418
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-450
Cow position:
Alignm length: 470
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 156

Conread position: 1-453
Cow position:
Alignm length: 471
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 159

Conread position: 1-460
Cow position:
Alignm length: 482
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 130

Conread position: 1-482
Cow position:
Alignm length: 504
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 159

Conread position: 1-482
Cow position:
Alignm length: 503
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 18

Conread position: 1-482
Cow position:
Alignm length: 505
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-484
Cow position:
Alignm length: 507
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 8

Conread position: 1-484
Cow position:
Alignm length: 501
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 159

Conread position: 1-485
Cow position:
Alignm length: 509
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 158

Conread position: 1-489
Cow position:
Alignm length: 514
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 164

Conread position: 1-489
Cow position:
Alignm length: 509
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 247

Conread position: 1-489
Cow position:
Alignm length: 513
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 84

Conread position: 1-489
Cow position:
Alignm length: 506
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 159

Conread position: 1-489
Cow position:
Alignm length: 510
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-489
Cow position:
Alignm length: 509
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 88

Conread position: 1-489
Cow position:
Alignm length: 516
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 510
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 89

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 34

Conread position: 1-489
Cow position:
Alignm length: 521
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 164

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 159

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 503
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 63

Conread position: 1-489
Cow position:
Alignm length: 513
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 30

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 126

Conread position: 1-489
Cow position:
Alignm length: 513
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 90

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 68

Conread position: 1-489
Cow position:
Alignm length: 499
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 160

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 2-293
Cow position:
Alignm length: 295
Alignm identity: 197
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 62

Conread position: 4-322
Cow position:
Alignm length: 327
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 10

Conread position: 4-322
Cow position:
Alignm length: 326
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 156

Conread position: 4-326
Cow position:
Alignm length: 330
Alignm identity: 236
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 36, 155

Conread position: 4-368
Cow position:
Alignm length: 375
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 141

Conread position: 5-278
Cow position:
Alignm length: 292
Alignm identity: 213
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 16, 120

Conread position: 5-487
Cow position:
Alignm length: 506
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 155

Conread position: 5-489
Cow position:
Alignm length: 505
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 12

Conread position: 6-290
Cow position:
Alignm length: 292
Alignm identity: 203
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 44, 142

Conread position: 8-228
Cow position:
Alignm length: 226
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 42, 77

Conread position: 8-295
Cow position:
Alignm length: 296
Alignm identity: 202
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 40, 152

Conread position: 8-302
Cow position:
Alignm length: 304
Alignm identity: 202
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 42, 19

Conread position: 8-484
Cow position:
Alignm length: 491
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 133

Conread position: 8-488
Cow position:
Alignm length: 504
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 12

Conread position: 8-489
Cow position:
Alignm length: 491
Alignm identity: 320
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 42, 81

Conread position: 8-489
Cow position:
Alignm length: 507
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 67

Conread position: 9-322
Cow position:
Alignm length: 321
Alignm identity: 220
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 41, 147

Conread position: 9-489
Cow position:
Alignm length: 503
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 91

Conread position: 9-489
Cow position:
Alignm length: 491
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 148

Conread position: 10-268
Cow position:
Alignm length: 269
Alignm identity: 186
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 36, 64

Conread position: 11-312
Cow position:
Alignm length: 308
Alignm identity: 225
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 39, 75

Conread position: 11-321
Cow position:
Alignm length: 319
Alignm identity: 215
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 36, 65

Conread position: 11-440
Cow position:
Alignm length: 452
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 149

Conread position: 23-489
Cow position:
Alignm length: 490
Alignm identity: 323
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 27, 98

Conread position: 24-235
Cow position:
Alignm length: 217
Alignm identity: 167
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 26, 45

Conread position: 32-305
Cow position:
Alignm length: 276
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 21

Conread position: 46-469
Cow position:
Alignm length: 452
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 70

Conread position: 49-486
Cow position:
Alignm length: 460
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 108

Conread position: 50-257
Cow position:
Alignm length: 211
Alignm identity: 160
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 36, 112

Conread position: 50-488
Cow position:
Alignm length: 460
Alignm identity: 307
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 107

Conread position: 51-489
Cow position:
Alignm length: 454
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 32

Conread position: 52-485
Cow position:
Alignm length: 454
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 25

Conread position: 53-466
Cow position:
Alignm length: 427
Alignm identity: 284
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 34, 57

Conread position: 57-487
Cow position:
Alignm length: 451
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 72

Conread position: 72-489
Cow position:
Alignm length: 436
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 83

Conread position: 72-489
Cow position:
Alignm length: 435
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 57

Conread position: 83-489
Cow position:
Alignm length: 428
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 44

Conread position: 84-489
Cow position:
Alignm length: 424
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 27

Conread position: 84-489
Cow position:
Alignm length: 421
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 69

Conread position: 99-489
Cow position:
Alignm length: 407
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 63

Conread position: 100-437
Cow position:
Alignm length: 349
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 53

Conread position: 104-489
Cow position:
Alignm length: 395
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 49

Conread position: 104-489
Cow position:
Alignm length: 394
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 49

Conread position: 108-487
Cow position:
Alignm length: 389
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 45

Conread position: 115-480
Cow position:
Alignm length: 386
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 39

Conread position: 155-460
Cow position:
Alignm length: 320
Alignm identity: 221
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 143, 25

Conread position: 178-405
Cow position:
Alignm length: 233
Alignm identity: 165
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 134, 88

Conread position: 178-482
Cow position:
Alignm length: 311
Alignm identity: 223
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 121, 88

Conread position: 178-489
Cow position:
Alignm length: 317
Alignm identity: 223
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 55, 93

Conread position: 180-322
Cow position:
Alignm length: 143
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 183-353
Cow position:
Alignm length: 176
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 141, 83

Conread position: 184-489
Cow position:
Alignm length: 308
Alignm identity: 217
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 24, 83

Conread position: 189-489
Cow position:
Alignm length: 319
Alignm identity: 228
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 116, 48

Conread position: 190-448
Cow position:
Alignm length: 262
Alignm identity: 181
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 131, 76

Conread position: 197-489
Cow position:
Alignm length: 301
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 38

Conread position: 229-470
Cow position:
Alignm length: 258
Alignm identity: 176
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 67

Conread position: 238-489
Cow position:
Alignm length: 261
Alignm identity: 183
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 90, 32

Conread position: 265-489
Cow position:
Alignm length: 228
Alignm identity: 163
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 45, 23

Conread position: 314-489
Cow position:
Alignm length: 177
Alignm identity: 136
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 72, 43

Conread position: 331-487
Cow position:
Alignm length: 158
Alignm identity: 119
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 55, 39

Conread position: 333-486
Cow position:
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 143

Show alignments to all cow chromosomes.