Cow genome map

Conread name: rpigca0_001979.y1

Conread position: 1-241
Cow position:
Alignm length: 258
Alignm identity: 189
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 49, 62

Conread position: 1-256
Cow position:
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 111

Conread position: 1-264
Cow position:
Alignm length: 272
Alignm identity: 205
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 49, 159

Conread position: 1-268
Cow position:
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 157

Conread position: 1-286
Cow position:
Alignm length: 296
Alignm identity: 211
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 47, 271

Conread position: 1-294
Cow position:
Alignm length: 297
Alignm identity: 218
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 57, 155

Conread position: 1-295
Cow position:
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 140

Conread position: 1-299
Cow position:
Alignm length: 306
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-302
Cow position:
Alignm length: 316
Alignm identity: 220
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 45, 74

Conread position: 1-303
Cow position:
Alignm length: 306
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 8

Conread position: 1-316
Cow position:
Alignm length: 322
Alignm identity: 229
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 49, 90

Conread position: 1-321
Cow position:
Alignm length: 329
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 1-322
Cow position:
Alignm length: 332
Alignm identity: 239
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 49, 123

Conread position: 1-322
Cow position:
Alignm length: 329
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 136

Conread position: 1-324
Cow position:
Alignm length: 342
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 163

Conread position: 1-326
Cow position:
Alignm length: 338
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 163

Conread position: 1-341
Cow position:
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 162

Conread position: 1-368
Cow position:
Alignm length: 374
Alignm identity: 257
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 83, 100

Conread position: 1-374
Cow position:
Alignm length: 380
Alignm identity: 258
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 49, 94

Conread position: 1-385
Cow position:
Alignm length: 401
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 162

Conread position: 1-389
Cow position:
Alignm length: 414
Alignm identity: 280
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 49, 66

Conread position: 1-389
Cow position:
Alignm length: 421
Alignm identity: 293
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 32, 171

Conread position: 1-441
Cow position:
Alignm length: 470
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 159

Conread position: 1-477
Cow position:
Alignm length: 503
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 138

Conread position: 1-484
Cow position:
Alignm length: 505
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 34

Conread position: 1-486
Cow position:
Alignm length: 511
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 133

Conread position: 1-486
Cow position:
Alignm length: 514
Alignm identity: 344
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 50, 149

Conread position: 1-487
Cow position:
Alignm length: 510
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-487
Cow position:
Alignm length: 518
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 1-488
Cow position:
Alignm length: 496
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 512
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 507
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 162

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 160

Conread position: 1-489
Cow position:
Alignm length: 517
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 166

Conread position: 1-489
Cow position:
Alignm length: 507
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 26

Conread position: 1-489
Cow position:
Alignm length: 513
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 161

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 513
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 160

Conread position: 1-489
Cow position:
Alignm length: 507
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 1-489
Cow position:
Alignm length: 510
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 159

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 117

Conread position: 1-489
Cow position:
Alignm length: 513
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 30

Conread position: 1-489
Cow position:
Alignm length: 508
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 21

Conread position: 1-489
Cow position:
Alignm length: 512
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 110

Conread position: 1-489
Cow position:
Alignm length: 512
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 155

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 515
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 160

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 161

Conread position: 1-489
Cow position:
Alignm length: 518
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 90

Conread position: 1-489
Cow position:
Alignm length: 515
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 140

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 158

Conread position: 4-289
Cow position:
Alignm length: 294
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 177

Conread position: 4-479
Cow position:
Alignm length: 495
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 114

Conread position: 4-489
Cow position:
Alignm length: 501
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 101

Conread position: 4-489
Cow position:
Alignm length: 508
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 162

Conread position: 4-489
Cow position:
Alignm length: 514
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 66

Conread position: 5-481
Cow position:
Alignm length: 497
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 155

Conread position: 5-489
Cow position:
Alignm length: 526
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 9

Conread position: 8-354
Cow position:
Alignm length: 355
Alignm identity: 240
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 42, 67

Conread position: 8-437
Cow position:
Alignm length: 443
Alignm identity: 304
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 42, 81

Conread position: 8-475
Cow position:
Alignm length: 485
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 152

Conread position: 8-485
Cow position:
Alignm length: 507
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 157

Conread position: 9-263
Cow position:
Alignm length: 264
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 99

Conread position: 9-320
Cow position:
Alignm length: 314
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 144

Conread position: 9-322
Cow position:
Alignm length: 332
Alignm identity: 238
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 41, 147

Conread position: 9-322
Cow position:
Alignm length: 321
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 64

Conread position: 9-452
Cow position:
Alignm length: 459
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 151

Conread position: 9-487
Cow position:
Alignm length: 503
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 151

Conread position: 9-488
Cow position:
Alignm length: 496
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 151

Conread position: 9-488
Cow position:
Alignm length: 498
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 152

Conread position: 9-489
Cow position:
Alignm length: 499
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 41

Conread position: 11-320
Cow position:
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 118

Conread position: 11-414
Cow position:
Alignm length: 424
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 124

Conread position: 12-246
Cow position:
Alignm length: 242
Alignm identity: 178
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 39, 148

Conread position: 12-299
Cow position:
Alignm length: 297
Alignm identity: 205
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 36, 145

Conread position: 15-489
Cow position:
Alignm length: 513
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 71

Conread position: 18-353
Cow position:
Alignm length: 345
Alignm identity: 243
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 28, 142

Conread position: 22-487
Cow position:
Alignm length: 479
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 48

Conread position: 23-395
Cow position:
Alignm length: 395
Alignm identity: 276
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 25, 133

Conread position: 23-489
Cow position:
Alignm length: 486
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 127

Conread position: 23-489
Cow position:
Alignm length: 490
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 102

Conread position: 24-323
Cow position:
Alignm length: 306
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 135

Conread position: 24-489
Cow position:
Alignm length: 490
Alignm identity: 326
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 23, 102

Conread position: 27-489
Cow position:
Alignm length: 492
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 134

Conread position: 30-412
Cow position:
Alignm length: 407
Alignm identity: 279
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 18, 129

Conread position: 46-300
Cow position:
Alignm length: 256
Alignm identity: 173
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 40, 108

Conread position: 49-462
Cow position:
Alignm length: 431
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 109

Conread position: 50-287
Cow position:
Alignm length: 239
Alignm identity: 167
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 37

Conread position: 72-322
Cow position:
Alignm length: 253
Alignm identity: 187
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 14, 76

Conread position: 72-396
Cow position:
Alignm length: 342
Alignm identity: 243
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 14, 83

Conread position: 79-305
Cow position:
Alignm length: 227
Alignm identity: 156
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 84-376
Cow position:
Alignm length: 301
Alignm identity: 214
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 216, 69

Conread position: 85-487
Cow position:
Alignm length: 417
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 42

Conread position: 100-489
Cow position:
Alignm length: 405
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 53

Conread position: 101-305
Cow position:
Alignm length: 205
Alignm identity: 145
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 105-489
Cow position:
Alignm length: 402
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 48

Conread position: 111-317
Cow position:
Alignm length: 207
Alignm identity: 152
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 112-489
Cow position:
Alignm length: 394
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 97

Conread position: 121-489
Cow position:
Alignm length: 388
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 31

Conread position: 130-489
Cow position:
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 24

Conread position: 138-489
Cow position:
Alignm length: 367
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 38

Conread position: 148-484
Cow position:
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 28

Conread position: 148-484
Cow position:
Alignm length: 352
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 28

Conread position: 149-354
Cow position:
Alignm length: 207
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 27

Conread position: 158-489
Cow position:
Alignm length: 342
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 15

Conread position: 178-489
Cow position:
Alignm length: 328
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 92

Conread position: 179-489
Cow position:
Alignm length: 327
Alignm identity: 227
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 115, 87

Conread position: 192-487
Cow position:
Alignm length: 298
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 146, 78

Conread position: 207-489
Cow position:
Alignm length: 298
Alignm identity: 217
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 88, 64

Conread position: 321-489
Cow position:
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 69, 37

Conread position: 322-489
Cow position:
Alignm length: 168
Alignm identity: 132
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 37, 0

Conread position: 327-489
Cow position:
Alignm length: 163
Alignm identity: 130
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 35, 0

Conread position: 338-489
Cow position:
Alignm length: 153
Alignm identity: 123
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 26

Conread position: 386-489
Cow position:
Alignm length: 104
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 96, 0

Show alignments to all cow chromosomes.