Cow genome map

Conread name: rpigca0_001979.y1

Conread position: 1-219
Cow position:
Alignm length: 230
Alignm identity: 179
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 49, 14

Conread position: 1-225
Cow position:
Alignm length: 232
Alignm identity: 180
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 50, 105

Conread position: 1-225
Cow position:
Alignm length: 232
Alignm identity: 178
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 49, 159

Conread position: 1-228
Cow position:
Alignm length: 238
Alignm identity: 176
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 49, 159

Conread position: 1-228
Cow position:
Alignm length: 248
Alignm identity: 182
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 173

Conread position: 1-243
Cow position:
Alignm length: 252
Alignm identity: 180
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 15

Conread position: 1-268
Cow position:
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-299
Cow position:
Alignm length: 305
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 88

Conread position: 1-302
Cow position:
Alignm length: 302
Alignm identity: 213
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 63, 0

Conread position: 1-302
Cow position:
Alignm length: 311
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 14

Conread position: 1-303
Cow position:
Alignm length: 322
Alignm identity: 229
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 49, 105

Conread position: 1-316
Cow position:
Alignm length: 323
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 161

Conread position: 1-320
Cow position:
Alignm length: 332
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 133

Conread position: 1-322
Cow position:
Alignm length: 330
Alignm identity: 231
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 49, 160

Conread position: 1-322
Cow position:
Alignm length: 326
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 8

Conread position: 1-322
Cow position:
Alignm length: 329
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-322
Cow position:
Alignm length: 325
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 82

Conread position: 1-322
Cow position:
Alignm length: 329
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 159

Conread position: 1-347
Cow position:
Alignm length: 349
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 156

Conread position: 1-357
Cow position:
Alignm length: 368
Alignm identity: 262
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 282, 48

Conread position: 1-365
Cow position:
Alignm length: 374
Alignm identity: 260
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 16

Conread position: 1-370
Cow position:
Alignm length: 381
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 160

Conread position: 1-378
Cow position:
Alignm length: 391
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 133

Conread position: 1-382
Cow position:
Alignm length: 402
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 161

Conread position: 1-409
Cow position:
Alignm length: 431
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 159

Conread position: 1-412
Cow position:
Alignm length: 435
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-413
Cow position:
Alignm length: 429
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 13

Conread position: 1-432
Cow position:
Alignm length: 445
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 90

Conread position: 1-451
Cow position:
Alignm length: 470
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 178

Conread position: 1-452
Cow position:
Alignm length: 477
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-475
Cow position:
Alignm length: 489
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 75

Conread position: 1-480
Cow position:
Alignm length: 492
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-484
Cow position:
Alignm length: 506
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 136

Conread position: 1-485
Cow position:
Alignm length: 502
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-487
Cow position:
Alignm length: 510
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 161

Conread position: 1-487
Cow position:
Alignm length: 501
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-487
Cow position:
Alignm length: 506
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 8

Conread position: 1-487
Cow position:
Alignm length: 491
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 70

Conread position: 1-489
Cow position:
Alignm length: 512
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 509
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 162

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 1-489
Cow position:
Alignm length: 512
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 133

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 515
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 161

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 515
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 159

Conread position: 1-489
Cow position:
Alignm length: 512
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 88

Conread position: 1-489
Cow position:
Alignm length: 510
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 134

Conread position: 1-489
Cow position:
Alignm length: 508
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 103

Conread position: 1-489
Cow position:
Alignm length: 512
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 141

Conread position: 1-489
Cow position:
Alignm length: 514
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 72

Conread position: 1-489
Cow position:
Alignm length: 515
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 162

Conread position: 1-489
Cow position:
Alignm length: 506
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 31

Conread position: 1-489
Cow position:
Alignm length: 500
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 117

Conread position: 1-489
Cow position:
Alignm length: 509
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 86

Conread position: 1-489
Cow position:
Alignm length: 500
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 13

Conread position: 1-489
Cow position:
Alignm length: 507
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 1-489
Cow position:
Alignm length: 504
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 63

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 8

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 519
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 516
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 69

Conread position: 1-489
Cow position:
Alignm length: 500
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 111

Conread position: 1-489
Cow position:
Alignm length: 510
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 52

Conread position: 1-489
Cow position:
Alignm length: 506
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 114

Conread position: 1-489
Cow position:
Alignm length: 509
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 157

Conread position: 1-489
Cow position:
Alignm length: 509
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 85

Conread position: 2-487
Cow position:
Alignm length: 503
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 156

Conread position: 4-322
Cow position:
Alignm length: 321
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 144

Conread position: 4-322
Cow position:
Alignm length: 332
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 156

Conread position: 4-437
Cow position:
Alignm length: 463
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 157

Conread position: 4-489
Cow position:
Alignm length: 508
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 63

Conread position: 4-489
Cow position:
Alignm length: 512
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 160

Conread position: 4-489
Cow position:
Alignm length: 508
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 102

Conread position: 4-489
Cow position:
Alignm length: 492
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 44

Conread position: 5-275
Cow position:
Alignm length: 278
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 155

Conread position: 5-317
Cow position:
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 151

Conread position: 5-474
Cow position:
Alignm length: 493
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 12

Conread position: 5-489
Cow position:
Alignm length: 506
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 9

Conread position: 7-273
Cow position:
Alignm length: 275
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 148

Conread position: 8-322
Cow position:
Alignm length: 320
Alignm identity: 221
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 40, 25

Conread position: 8-484
Cow position:
Alignm length: 490
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 129

Conread position: 8-489
Cow position:
Alignm length: 487
Alignm identity: 311
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 316, 56

Conread position: 8-489
Cow position:
Alignm length: 501
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 27

Conread position: 9-263
Cow position:
Alignm length: 263
Alignm identity: 187
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 39, 118

Conread position: 9-291
Cow position:
Alignm length: 290
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 151

Conread position: 9-327
Cow position:
Alignm length: 326
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 151

Conread position: 9-357
Cow position:
Alignm length: 362
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 114

Conread position: 9-480
Cow position:
Alignm length: 499
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 119

Conread position: 9-487
Cow position:
Alignm length: 507
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 154

Conread position: 9-487
Cow position:
Alignm length: 492
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 77

Conread position: 9-489
Cow position:
Alignm length: 503
Alignm identity: 330
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 12, 47

Conread position: 9-489
Cow position:
Alignm length: 507
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 105

Conread position: 9-489
Cow position:
Alignm length: 493
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 151

Conread position: 9-489
Cow position:
Alignm length: 500
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 29

Conread position: 9-489
Cow position:
Alignm length: 501
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 150

Conread position: 9-489
Cow position:
Alignm length: 510
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 151

Conread position: 10-273
Cow position:
Alignm length: 271
Alignm identity: 180
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 150

Conread position: 10-328
Cow position:
Alignm length: 327
Alignm identity: 232
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 40, 8

Conread position: 10-489
Cow position:
Alignm length: 496
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 150

Conread position: 10-489
Cow position:
Alignm length: 496
Alignm identity: 331
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 76, 7

Conread position: 11-489
Cow position:
Alignm length: 501
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 6

Conread position: 13-432
Cow position:
Alignm length: 439
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 96

Conread position: 23-424
Cow position:
Alignm length: 415
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 137

Conread position: 23-489
Cow position:
Alignm length: 491
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 137

Conread position: 24-322
Cow position:
Alignm length: 314
Alignm identity: 223
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 26, 257

Conread position: 24-451
Cow position:
Alignm length: 447
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 18

Conread position: 46-353
Cow position:
Alignm length: 319
Alignm identity: 224
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 40, 84

Conread position: 49-302
Cow position:
Alignm length: 258
Alignm identity: 178
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 36, 66

Conread position: 49-342
Cow position:
Alignm length: 297
Alignm identity: 207
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 261, 32

Conread position: 49-488
Cow position:
Alignm length: 457
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 58

Conread position: 49-489
Cow position:
Alignm length: 457
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 106

Conread position: 49-489
Cow position:
Alignm length: 455
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 106

Conread position: 51-489
Cow position:
Alignm length: 457
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 78

Conread position: 54-489
Cow position:
Alignm length: 455
Alignm identity: 306
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 101

Conread position: 55-484
Cow position:
Alignm length: 446
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 40

Conread position: 65-489
Cow position:
Alignm length: 432
Alignm identity: 287
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 7, 20

Conread position: 65-489
Cow position:
Alignm length: 439
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 5

Conread position: 72-421
Cow position:
Alignm length: 369
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 83

Conread position: 72-487
Cow position:
Alignm length: 433
Alignm identity: 286
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 14, 86

Conread position: 72-489
Cow position:
Alignm length: 433
Alignm identity: 293
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 14, 86

Conread position: 72-489
Cow position:
Alignm length: 437
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 63

Conread position: 84-259
Cow position:
Alignm length: 176
Alignm identity: 132
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 27, 0

Conread position: 84-489
Cow position:
Alignm length: 421
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 9

Conread position: 85-489
Cow position:
Alignm length: 420
Alignm identity: 290
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 240, 14

Conread position: 99-489
Cow position:
Alignm length: 406
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 54

Conread position: 105-489
Cow position:
Alignm length: 398
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 43

Conread position: 107-489
Cow position:
Alignm length: 399
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 46

Conread position: 112-320
Cow position:
Alignm length: 214
Alignm identity: 167
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 72, 41

Conread position: 118-484
Cow position:
Alignm length: 385
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 159

Conread position: 118-489
Cow position:
Alignm length: 378
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 36

Conread position: 119-365
Cow position:
Alignm length: 250
Alignm identity: 171
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 64, 32

Conread position: 122-489
Cow position:
Alignm length: 380
Alignm identity: 251
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 75, 31

Conread position: 139-489
Cow position:
Alignm length: 352
Alignm identity: 245
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 202, 14

Conread position: 154-489
Cow position:
Alignm length: 347
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 26

Conread position: 155-489
Cow position:
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 20

Conread position: 160-484
Cow position:
Alignm length: 339
Alignm identity: 236
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 120, 15

Conread position: 165-489
Cow position:
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 15

Conread position: 178-489
Cow position:
Alignm length: 329
Alignm identity: 236
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 145, 93

Conread position: 185-489
Cow position:
Alignm length: 327
Alignm identity: 231
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 104, 65

Conread position: 212-484
Cow position:
Alignm length: 291
Alignm identity: 218
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 85, 58

Conread position: 237-489
Cow position:
Alignm length: 265
Alignm identity: 196
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 90, 33

Conread position: 314-489
Cow position:
Alignm length: 177
Alignm identity: 137
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 69, 44

Show alignments to all cow chromosomes.