Cow genome map
| Conread name: | rpigca0_001979.y1 |
| Conread position: | 1-243 |
| Cow position: | chr23:1941595-1941335 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 49, 161 |
| Conread position: | 1-244 |
| Cow position: | chr23:10554565-10554811 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 160 |
| Conread position: | 1-250 |
| Cow position: | chr23:36748286-36748519 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 1-293 |
| Cow position: | chr23:2721375-2721089 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 85 |
| Conread position: | 1-302 |
| Cow position: | chr23:24504555-24504249 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 45, 157 |
| Conread position: | 1-305 |
| Cow position: | chr23:26840829-26840524 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 125 |
| Conread position: | 1-317 |
| Cow position: | chr23:361984-362297 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-317 |
| Cow position: | chr23:23470387-23470066 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 128 |
| Conread position: | 1-317 |
| Cow position: | chr23:26066565-26066261 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 49, 94 |
| Conread position: | 1-318 |
| Cow position: | chr23:10013993-10013678 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-322 |
| Cow position: | chr23:14738555-14738239 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 1-326 |
| Cow position: | chr23:39812678-39812359 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 1-379 |
| Cow position: | chr23:39389704-39389337 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 78, 63 |
| Conread position: | 1-463 |
| Cow position: | chr23:24098784-24098311 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 108 |
| Conread position: | 1-483 |
| Cow position: | chr23:1321741-1322231 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 156 |
| Conread position: | 1-488 |
| Cow position: | chr23:11128669-11128177 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 114 |
| Conread position: | 1-488 |
| Cow position: | chr23:37198853-37199355 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 105 |
| Conread position: | 1-489 |
| Cow position: | chr23:344811-345298 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr23:1337832-1338331 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 1-489 |
| Cow position: | chr23:2023431-2023927 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 1-489 |
| Cow position: | chr23:3286415-3285916 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 110 |
| Conread position: | 1-489 |
| Cow position: | chr23:4636693-4637198 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr23:5623922-5624415 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 134 |
| Conread position: | 1-489 |
| Cow position: | chr23:6223475-6223007 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 156 |
| Conread position: | 1-489 |
| Cow position: | chr23:7360109-7359618 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 1-489 |
| Cow position: | chr23:8708049-8707548 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 160 |
| Conread position: | 1-489 |
| Cow position: | chr23:11344151-11343654 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 161 |
| Conread position: | 1-489 |
| Cow position: | chr23:11376660-11377160 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 1-489 |
| Cow position: | chr23:11782444-11781942 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr23:15180614-15180116 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 149 |
| Conread position: | 1-489 |
| Cow position: | chr23:26828901-26828410 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 1-489 |
| Cow position: | chr23:28915986-28915490 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr23:30633933-30634437 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 165 |
| Conread position: | 1-489 |
| Cow position: | chr23:31833349-31833842 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 21 |
| Conread position: | 1-489 |
| Cow position: | chr23:40890432-40889934 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 159 |
| Conread position: | 4-489 |
| Cow position: | chr23:19493508-19493006 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 4-489 |
| Cow position: | chr23:28306500-28305999 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 157 |
| Conread position: | 4-489 |
| Cow position: | chr23:30244134-30243659 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 83 |
| Conread position: | 4-489 |
| Cow position: | chr23:30622845-30623340 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 161 |
| Conread position: | 5-389 |
| Cow position: | chr23:11405033-11405425 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 70 |
| Conread position: | 5-487 |
| Cow position: | chr23:6173366-6173859 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 130 |
| Conread position: | 5-488 |
| Cow position: | chr23:15529239-15528745 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 106 |
| Conread position: | 5-489 |
| Cow position: | chr23:11078933-11078435 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 155 |
| Conread position: | 8-322 |
| Cow position: | chr23:10495650-10495970 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 42, 119 |
| Conread position: | 8-322 |
| Cow position: | chr23:31897075-31896771 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 42, 110 |
| Conread position: | 8-489 |
| Cow position: | chr23:25357993-25357503 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 9-322 |
| Cow position: | chr23:26230775-26230470 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 127 |
| Conread position: | 9-361 |
| Cow position: | chr23:2033042-2032693 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 151 |
| Conread position: | 9-445 |
| Cow position: | chr23:40825432-40825002 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 41 |
| Conread position: | 9-474 |
| Cow position: | chr23:35324592-35325056 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 9-486 |
| Cow position: | chr23:20025584-20025094 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 152 |
| Conread position: | 9-487 |
| Cow position: | chr23:1310925-1311412 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 129 |
| Conread position: | 9-487 |
| Cow position: | chr23:2180212-2180687 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 9-488 |
| Cow position: | chr23:25554241-25553750 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 86 |
| Conread position: | 9-489 |
| Cow position: | chr23:2408564-2409054 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 152 |
| Conread position: | 9-489 |
| Cow position: | chr23:22170557-22170065 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 151 |
| Conread position: | 10-257 |
| Cow position: | chr23:26305819-26305571 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 21, 151 |
| Conread position: | 46-489 |
| Cow position: | chr23:38027353-38027790 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 83 |
| Conread position: | 49-489 |
| Cow position: | chr23:3877544-3877985 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 106 |
| Conread position: | 51-488 |
| Cow position: | chr23:40539078-40539519 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 104 |
| Conread position: | 51-489 |
| Cow position: | chr23:2761501-2761056 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 104 |
| Conread position: | 53-489 |
| Cow position: | chr23:14839595-14840012 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 29 |
| Conread position: | 54-314 |
| Cow position: | chr23:2269777-2270032 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 64-305 |
| Cow position: | chr23:9540605-9540844 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 67-304 |
| Cow position: | chr23:5539551-5539779 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 72-414 |
| Cow position: | chr23:20541552-20541208 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 72-489 |
| Cow position: | chr23:14959378-14959794 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 54 |
| Conread position: | 97-489 |
| Cow position: | chr23:416476-416085 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 56 |
| Conread position: | 108-489 |
| Cow position: | chr23:21277093-21277476 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 45 |
| Conread position: | 113-265 |
| Cow position: | chr23:11208539-11208390 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 80, 6 |
| Conread position: | 119-489 |
| Cow position: | chr23:29625508-29625131 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 189, 32 |
| Conread position: | 183-489 |
| Cow position: | chr23:32007918-32008219 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 145, 27 |
| Conread position: | 187-489 |
| Cow position: | chr23:29459782-29460094 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 151, 21 |
| Conread position: | 188-488 |
| Cow position: | chr23:20170735-20171043 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 53 |
| Conread position: | 200-486 |
| Cow position: | chr23:1325856-1326152 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 70 |
| Conread position: | 210-489 |
| Cow position: | chr23:20389572-20389864 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 128, 60 |
| Conread position: | 232-489 |
| Cow position: | chr23:3887358-3887099 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 314-489 |
| Cow position: | chr23:1048541-1048716 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 72, 43 |
| Conread position: | 320-489 |
| Cow position: | chr23:2737547-2737379 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 39, 0 |
Show alignments to all cow chromosomes.