Cow genome map

Conread name: rpigca0_001979.y1

Conread position: 1-226
Cow position: chr24:31770229-31770000 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 49, 161

Conread position: 1-247
Cow position: chr24:24250144-24249898 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 193
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 50, 159

Conread position: 1-252
Cow position: chr24:2731122-2731386 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 203
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 47, 133

Conread position: 1-256
Cow position: chr24:13304749-13305002 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 31

Conread position: 1-273
Cow position: chr24:11839605-11839334 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 49, 133

Conread position: 1-293
Cow position: chr24:18374213-18373902 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 36, 169

Conread position: 1-321
Cow position: chr24:7030732-7031056 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 234
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 47, 7

Conread position: 1-322
Cow position: chr24:6340454-6340136 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 239
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 15, 114

Conread position: 1-322
Cow position: chr24:6542150-6542481 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 238
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 21

Conread position: 1-322
Cow position: chr24:17752501-17752813 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 130

Conread position: 1-322
Cow position: chr24:25110996-25110681 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 89

Conread position: 1-322
Cow position: chr24:25424428-25424122 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 25

Conread position: 1-356
Cow position: chr24:39160121-39160460 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 49, 108

Conread position: 1-365
Cow position: chr24:15674870-15675256 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 113

Conread position: 1-406
Cow position: chr24:29064222-29064636 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 26

Conread position: 1-467
Cow position: chr24:36710575-36710114 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 49

Conread position: 1-474
Cow position: chr24:45009935-45009452 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 159

Conread position: 1-484
Cow position: chr24:16267194-16266712 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 150

Conread position: 1-484
Cow position: chr24:17412166-17411664 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 85

Conread position: 1-484
Cow position: chr24:25991732-25992186 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 324
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 269, 63

Conread position: 1-486
Cow position: chr24:17309678-17310181 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 155

Conread position: 1-487
Cow position: chr24:10243811-10244296 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 159

Conread position: 1-487
Cow position: chr24:18266742-18267234 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 159

Conread position: 1-487
Cow position: chr24:26846852-26847351 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-488
Cow position: chr24:32740178-32740658 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-488
Cow position: chr24:45087275-45086774 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 160

Conread position: 1-489
Cow position: chr24:6035429-6035931 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 160

Conread position: 1-489
Cow position: chr24:6271862-6271390 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position: chr24:12090726-12090230 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 116

Conread position: 1-489
Cow position: chr24:12331956-12332457 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position: chr24:13497051-13496534 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 1-489
Cow position: chr24:14336601-14336117 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 338
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 48, 94

Conread position: 1-489
Cow position: chr24:14375911-14376393 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 8

Conread position: 1-489
Cow position: chr24:14760650-14760142 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 160

Conread position: 1-489
Cow position: chr24:16080734-16081237 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 1-489
Cow position: chr24:16909065-16908554 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 161

Conread position: 1-489
Cow position: chr24:17105131-17105627 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 99

Conread position: 1-489
Cow position: chr24:17566596-17566101 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position: chr24:18113206-18112705 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 1-489
Cow position: chr24:20283461-20283960 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position: chr24:26412797-26412301 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 1-489
Cow position: chr24:27148842-27148355 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 13

Conread position: 1-489
Cow position: chr24:29180100-29179616 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 19

Conread position: 1-489
Cow position: chr24:32823383-32823872 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 86

Conread position: 1-489
Cow position: chr24:32853960-32853462 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 156

Conread position: 1-489
Cow position: chr24:35067044-35067527 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position: chr24:40036203-40036704 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 74

Conread position: 1-489
Cow position: chr24:40149646-40150138 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 86

Conread position: 1-489
Cow position: chr24:41006223-41005728 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 162

Conread position: 4-355
Cow position: chr24:19466513-19466866 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 110

Conread position: 4-469
Cow position: chr24:30870221-30870697 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 156

Conread position: 4-483
Cow position: chr24:17365238-17365717 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 23

Conread position: 4-489
Cow position: chr24:9071099-9071591 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 102

Conread position: 4-489
Cow position: chr24:29191031-29190538 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 156

Conread position: 4-489
Cow position: chr24:40466665-40467163 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 157

Conread position: 5-487
Cow position: chr24:15372534-15372032 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 346
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 45, 11

Conread position: 5-489
Cow position: chr24:18222747-18223230 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 48

Conread position: 6-489
Cow position: chr24:43634849-43634366 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 21

Conread position: 7-489
Cow position: chr24:11462269-11462761 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 84

Conread position: 8-392
Cow position: chr24:32759376-32759762 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 152

Conread position: 8-488
Cow position: chr24:21998699-21999178 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 318
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 42, 12

Conread position: 8-489
Cow position: chr24:16056124-16056608 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 129

Conread position: 9-227
Cow position: chr24:11886570-11886355 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 36, 122

Conread position: 9-234
Cow position: chr24:39441379-39441599 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 146

Conread position: 9-266
Cow position: chr24:31323680-31323426 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 41, 145

Conread position: 9-312
Cow position: chr24:30768128-30767831 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 40, 143

Conread position: 9-487
Cow position: chr24:38814385-38813899 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 147

Conread position: 9-489
Cow position: chr24:6415905-6415413 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 151

Conread position: 9-489
Cow position: chr24:12202774-12203260 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 122

Conread position: 9-489
Cow position: chr24:32361121-32361595 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 124

Conread position: 10-322
Cow position: chr24:40896496-40896807 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 211
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 60, 128

Conread position: 10-453
Cow position: chr24:42943939-42944369 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 317
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 36, 25

Conread position: 10-489
Cow position: chr24:13373764-13374264 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 113

Conread position: 16-486
Cow position: chr24:15667022-15667493 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 21

Conread position: 23-268
Cow position: chr24:11006380-11006138 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 16, 146

Conread position: 23-489
Cow position: chr24:35823477-35823955 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 75

Conread position: 26-484
Cow position: chr24:39956384-39956846 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 134

Conread position: 42-393
Cow position: chr24:25677410-25677058 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 255
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 44, 78

Conread position: 48-211
Cow position: chr24:27766477-27766639 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 134
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 36, 107

Conread position: 49-328
Cow position: chr24:4721153-4721423 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 188
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 37, 59

Conread position: 49-489
Cow position: chr24:28497436-28497882 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 148

Conread position: 55-353
Cow position: chr24:21094580-21094870 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 202
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 101

Conread position: 56-489
Cow position: chr24:17368242-17368675 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 43

Conread position: 72-489
Cow position: chr24:16558615-16559029 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 43

Conread position: 72-489
Cow position: chr24:33937603-33937179 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 84

Conread position: 84-489
Cow position: chr24:16474963-16474556 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 286
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 110, 21

Conread position: 85-299
Cow position: chr24:42581887-42582104 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 76, 171

Conread position: 103-412
Cow position: chr24:39258481-39258176 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 223
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 190, 46

Conread position: 144-487
Cow position: chr24:6524601-6524249 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 33

Conread position: 181-487
Cow position: chr24:36726723-36726408 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 228
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 122, 49

Conread position: 183-489
Cow position: chr24:9088551-9088857 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 214
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 139, 82

Conread position: 184-489
Cow position: chr24:31381955-31381649 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 86

Conread position: 187-489
Cow position: chr24:7959951-7960266 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 36, 46

Conread position: 189-489
Cow position: chr24:8431930-8431622 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 76

Conread position: 196-473
Cow position: chr24:14609321-14609599 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 132, 70

Conread position: 207-488
Cow position: chr24:36721989-36721695 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 6

Conread position: 223-489
Cow position: chr24:38002513-38002787 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 184
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 76, 29

Conread position: 246-489
Cow position: chr24:36404825-36404573 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 7, 29

Conread position: 313-489
Cow position: chr24:6544002-6543835 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 323-489
Cow position: chr24:5653295-5653461 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 67, 36

Conread position: 325-489
Cow position: chr24:27724630-27724793 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 327-489
Cow position: chr24:29131019-29131179 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 132
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 60, 31

Conread position: 342-467
Cow position: chr24:19467181-19467307 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 49, 17

Show alignments to all cow chromosomes.