Cow genome map
Conread name: | rpigca0_001979.y1 |
Conread position: | 1-238 |
Cow position: | chr25:11662336-11662574 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 191 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 52, 66 |
Conread position: | 1-239 |
Cow position: | chr25:24213591-24213829 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 174 |
Alignm E-value: | 4e-28 |
Alignm gaps (pig, cow): | 52, 105 |
Conread position: | 1-258 |
Cow position: | chr25:24669920-24670173 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 155 |
Conread position: | 1-307 |
Cow position: | chr25:9595761-9595459 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 133 |
Conread position: | 1-320 |
Cow position: | chr25:16308744-16309074 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 158 |
Conread position: | 1-322 |
Cow position: | chr25:13332861-13332546 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 235 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 52, 138 |
Conread position: | 1-322 |
Cow position: | chr25:21950575-21950255 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 158 |
Conread position: | 1-368 |
Cow position: | chr25:20790474-20790860 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 276 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 49, 8 |
Conread position: | 1-379 |
Cow position: | chr25:14954599-14954973 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 45 |
Conread position: | 1-409 |
Cow position: | chr25:34013311-34013726 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 109 |
Conread position: | 1-432 |
Cow position: | chr25:9055107-9054674 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 159 |
Conread position: | 1-450 |
Cow position: | chr25:4522371-4522825 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 155 |
Conread position: | 1-450 |
Cow position: | chr25:24204685-24205144 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 59 |
Conread position: | 1-460 |
Cow position: | chr25:20495978-20495532 (view UCSC Genome Browser custom track) |
Alignm length: | 467 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 52 |
Conread position: | 1-474 |
Cow position: | chr25:20075921-20075442 (view UCSC Genome Browser custom track) |
Alignm length: | 494 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 160 |
Conread position: | 1-484 |
Cow position: | chr25:17992699-17993189 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 160 |
Conread position: | 1-485 |
Cow position: | chr25:17994850-17995341 (view UCSC Genome Browser custom track) |
Alignm length: | 508 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 163 |
Conread position: | 1-487 |
Cow position: | chr25:11666110-11665625 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 133 |
Conread position: | 1-487 |
Cow position: | chr25:40321842-40322341 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 13 |
Conread position: | 1-489 |
Cow position: | chr25:8655737-8655237 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 113 |
Conread position: | 1-489 |
Cow position: | chr25:12755990-12756477 (view UCSC Genome Browser custom track) |
Alignm length: | 514 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 19 |
Conread position: | 1-489 |
Cow position: | chr25:13960507-13960014 (view UCSC Genome Browser custom track) |
Alignm length: | 506 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 159 |
Conread position: | 1-489 |
Cow position: | chr25:16922348-16922842 (view UCSC Genome Browser custom track) |
Alignm length: | 509 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 132 |
Conread position: | 1-489 |
Cow position: | chr25:17562512-17561995 (view UCSC Genome Browser custom track) |
Alignm length: | 527 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 290 |
Conread position: | 1-489 |
Cow position: | chr25:17585568-17586073 (view UCSC Genome Browser custom track) |
Alignm length: | 517 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 168 |
Conread position: | 1-489 |
Cow position: | chr25:17658060-17657568 (view UCSC Genome Browser custom track) |
Alignm length: | 510 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 159 |
Conread position: | 1-489 |
Cow position: | chr25:18129641-18129176 (view UCSC Genome Browser custom track) |
Alignm length: | 492 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 13 |
Conread position: | 1-489 |
Cow position: | chr25:18269905-18269420 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 88 |
Conread position: | 1-489 |
Cow position: | chr25:20771889-20772379 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 162 |
Conread position: | 1-489 |
Cow position: | chr25:23739799-23740298 (view UCSC Genome Browser custom track) |
Alignm length: | 514 |
Alignm identity: | 353 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 15 |
Conread position: | 1-489 |
Cow position: | chr25:24302819-24303318 (view UCSC Genome Browser custom track) |
Alignm length: | 510 |
Alignm identity: | 359 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 158 |
Conread position: | 1-489 |
Cow position: | chr25:24654727-24655222 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 103 |
Conread position: | 1-489 |
Cow position: | chr25:25480191-25480651 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 327, 52 |
Conread position: | 1-489 |
Cow position: | chr25:25510337-25509820 (view UCSC Genome Browser custom track) |
Alignm length: | 527 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 159 |
Conread position: | 1-489 |
Cow position: | chr25:25826901-25826395 (view UCSC Genome Browser custom track) |
Alignm length: | 515 |
Alignm identity: | 395 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 159 |
Conread position: | 1-489 |
Cow position: | chr25:27231795-27231306 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 133 |
Conread position: | 1-489 |
Cow position: | chr25:33838821-33838330 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 160 |
Conread position: | 1-489 |
Cow position: | chr25:34343462-34343959 (view UCSC Genome Browser custom track) |
Alignm length: | 510 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 113 |
Conread position: | 1-489 |
Cow position: | chr25:35554116-35553617 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 162 |
Conread position: | 1-489 |
Cow position: | chr25:35567442-35567936 (view UCSC Genome Browser custom track) |
Alignm length: | 511 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 158 |
Conread position: | 1-489 |
Cow position: | chr25:35754799-35755296 (view UCSC Genome Browser custom track) |
Alignm length: | 508 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 157 |
Conread position: | 1-489 |
Cow position: | chr25:37593851-37593349 (view UCSC Genome Browser custom track) |
Alignm length: | 515 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 160 |
Conread position: | 1-489 |
Cow position: | chr25:39386387-39386882 (view UCSC Genome Browser custom track) |
Alignm length: | 508 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 156 |
Conread position: | 1-489 |
Cow position: | chr25:41121450-41120956 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 160 |
Conread position: | 1-489 |
Cow position: | chr25:41356355-41356850 (view UCSC Genome Browser custom track) |
Alignm length: | 514 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 15 |
Conread position: | 2-299 |
Cow position: | chr25:5570897-5570607 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 203 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 84, 49 |
Conread position: | 3-489 |
Cow position: | chr25:17553824-17554311 (view UCSC Genome Browser custom track) |
Alignm length: | 508 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 116 |
Conread position: | 4-285 |
Cow position: | chr25:22760335-22760058 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 208 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 47, 24 |
Conread position: | 4-322 |
Cow position: | chr25:41366716-41367017 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 226 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 82, 11 |
Conread position: | 4-340 |
Cow position: | chr25:34768124-34767787 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 80 |
Conread position: | 4-489 |
Cow position: | chr25:7800456-7799971 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 151 |
Conread position: | 4-489 |
Cow position: | chr25:10137269-10136771 (view UCSC Genome Browser custom track) |
Alignm length: | 516 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 167 |
Conread position: | 4-489 |
Cow position: | chr25:26353343-26353837 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 83 |
Conread position: | 5-355 |
Cow position: | chr25:18323915-18324269 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 122 |
Conread position: | 8-453 |
Cow position: | chr25:37967402-37966945 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 309 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 38, 19 |
Conread position: | 9-326 |
Cow position: | chr25:8080306-8079989 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 233 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 41, 132 |
Conread position: | 9-489 |
Cow position: | chr25:26896485-26895999 (view UCSC Genome Browser custom track) |
Alignm length: | 496 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 131 |
Conread position: | 9-489 |
Cow position: | chr25:41097758-41098244 (view UCSC Genome Browser custom track) |
Alignm length: | 498 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 151 |
Conread position: | 10-489 |
Cow position: | chr25:2516440-2515955 (view UCSC Genome Browser custom track) |
Alignm length: | 501 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 85 |
Conread position: | 10-489 |
Cow position: | chr25:10012620-10013114 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 149 |
Conread position: | 11-322 |
Cow position: | chr25:30525937-30526243 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 218 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 6, 113 |
Conread position: | 12-483 |
Cow position: | chr25:18265627-18265150 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 106 |
Conread position: | 18-489 |
Cow position: | chr25:33687778-33688271 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 140 |
Conread position: | 24-489 |
Cow position: | chr25:28275246-28275719 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 110 |
Conread position: | 45-489 |
Cow position: | chr25:4372315-4372743 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 110 |
Conread position: | 46-298 |
Cow position: | chr25:40141106-40141354 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 171 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 21, 26 |
Conread position: | 49-322 |
Cow position: | chr25:16401496-16401762 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 206 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 107 |
Conread position: | 51-489 |
Cow position: | chr25:37648808-37648378 (view UCSC Genome Browser custom track) |
Alignm length: | 446 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 89 |
Conread position: | 55-489 |
Cow position: | chr25:12833992-12834407 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 302 |
Alignm E-value: | 9e-36 |
Alignm gaps (pig, cow): | 31, 13 |
Conread position: | 55-489 |
Cow position: | chr25:22151494-22151052 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 100 |
Conread position: | 58-413 |
Cow position: | chr25:22576437-22576785 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 263 |
Alignm E-value: | 4.00001e-40 |
Alignm gaps (pig, cow): | 27, 101 |
Conread position: | 69-489 |
Cow position: | chr25:2595141-2594719 (view UCSC Genome Browser custom track) |
Alignm length: | 436 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 86 |
Conread position: | 84-488 |
Cow position: | chr25:12938849-12939259 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 214, 75 |
Conread position: | 84-489 |
Cow position: | chr25:23914024-23913619 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 9 |
Conread position: | 87-299 |
Cow position: | chr25:24776707-24776507 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 165 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 150, 66 |
Conread position: | 112-467 |
Cow position: | chr25:23366997-23366636 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 267 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 192, 41 |
Conread position: | 155-489 |
Cow position: | chr25:24459432-24459749 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 228 |
Alignm E-value: | 6e-33 |
Alignm gaps (pig, cow): | 237, 19 |
Conread position: | 159-489 |
Cow position: | chr25:34502936-34503275 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 16 |
Conread position: | 162-489 |
Cow position: | chr25:33574448-33574780 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 107 |
Conread position: | 180-466 |
Cow position: | chr25:34237362-34237649 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 183 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 117, 86 |
Conread position: | 201-489 |
Cow position: | chr25:23998942-23999236 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 213 |
Alignm E-value: | 9e-36 |
Alignm gaps (pig, cow): | 102, 50 |
Conread position: | 209-489 |
Cow position: | chr25:2497975-2497690 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 191 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 129, 85 |
Conread position: | 212-489 |
Cow position: | chr25:449569-449843 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 189 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 11, 59 |
Conread position: | 214-489 |
Cow position: | chr25:18452532-18452249 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 202 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 107, 34 |
Conread position: | 255-489 |
Cow position: | chr25:21968368-21968127 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 176 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 72, 16 |
Conread position: | 314-489 |
Cow position: | chr25:30340236-30340413 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 136 |
Alignm E-value: | 5e-30 |
Alignm gaps (pig, cow): | 69, 56 |
Conread position: | 321-485 |
Cow position: | chr25:10633895-10634055 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 124 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.