Cow genome map

Conread name: rpigca0_001979.y1

Conread position: 1-238
Cow position: chr25:11662336-11662574 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 52, 66

Conread position: 1-239
Cow position: chr25:24213591-24213829 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 52, 105

Conread position: 1-258
Cow position: chr25:24669920-24670173 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 155

Conread position: 1-307
Cow position: chr25:9595761-9595459 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 133

Conread position: 1-320
Cow position: chr25:16308744-16309074 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 158

Conread position: 1-322
Cow position: chr25:13332861-13332546 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 52, 138

Conread position: 1-322
Cow position: chr25:21950575-21950255 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 158

Conread position: 1-368
Cow position: chr25:20790474-20790860 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 49, 8

Conread position: 1-379
Cow position: chr25:14954599-14954973 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 45

Conread position: 1-409
Cow position: chr25:34013311-34013726 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 109

Conread position: 1-432
Cow position: chr25:9055107-9054674 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-450
Cow position: chr25:4522371-4522825 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 155

Conread position: 1-450
Cow position: chr25:24204685-24205144 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 59

Conread position: 1-460
Cow position: chr25:20495978-20495532 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 52

Conread position: 1-474
Cow position: chr25:20075921-20075442 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 160

Conread position: 1-484
Cow position: chr25:17992699-17993189 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 160

Conread position: 1-485
Cow position: chr25:17994850-17995341 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 163

Conread position: 1-487
Cow position: chr25:11666110-11665625 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 133

Conread position: 1-487
Cow position: chr25:40321842-40322341 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 13

Conread position: 1-489
Cow position: chr25:8655737-8655237 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 113

Conread position: 1-489
Cow position: chr25:12755990-12756477 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 19

Conread position: 1-489
Cow position: chr25:13960507-13960014 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position: chr25:16922348-16922842 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 132

Conread position: 1-489
Cow position: chr25:17562512-17561995 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 290

Conread position: 1-489
Cow position: chr25:17585568-17586073 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-489
Cow position: chr25:17658060-17657568 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position: chr25:18129641-18129176 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 13

Conread position: 1-489
Cow position: chr25:18269905-18269420 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 88

Conread position: 1-489
Cow position: chr25:20771889-20772379 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 1-489
Cow position: chr25:23739799-23740298 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 15

Conread position: 1-489
Cow position: chr25:24302819-24303318 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 158

Conread position: 1-489
Cow position: chr25:24654727-24655222 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 103

Conread position: 1-489
Cow position: chr25:25480191-25480651 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 52

Conread position: 1-489
Cow position: chr25:25510337-25509820 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position: chr25:25826901-25826395 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position: chr25:27231795-27231306 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 133

Conread position: 1-489
Cow position: chr25:33838821-33838330 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 160

Conread position: 1-489
Cow position: chr25:34343462-34343959 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 113

Conread position: 1-489
Cow position: chr25:35554116-35553617 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 1-489
Cow position: chr25:35567442-35567936 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 158

Conread position: 1-489
Cow position: chr25:35754799-35755296 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 157

Conread position: 1-489
Cow position: chr25:37593851-37593349 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 160

Conread position: 1-489
Cow position: chr25:39386387-39386882 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 156

Conread position: 1-489
Cow position: chr25:41121450-41120956 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 160

Conread position: 1-489
Cow position: chr25:41356355-41356850 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 15

Conread position: 2-299
Cow position: chr25:5570897-5570607 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 84, 49

Conread position: 3-489
Cow position: chr25:17553824-17554311 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 116

Conread position: 4-285
Cow position: chr25:22760335-22760058 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 47, 24

Conread position: 4-322
Cow position: chr25:41366716-41367017 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 226
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 82, 11

Conread position: 4-340
Cow position: chr25:34768124-34767787 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 80

Conread position: 4-489
Cow position: chr25:7800456-7799971 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 151

Conread position: 4-489
Cow position: chr25:10137269-10136771 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 167

Conread position: 4-489
Cow position: chr25:26353343-26353837 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 83

Conread position: 5-355
Cow position: chr25:18323915-18324269 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 122

Conread position: 8-453
Cow position: chr25:37967402-37966945 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 309
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 38, 19

Conread position: 9-326
Cow position: chr25:8080306-8079989 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 41, 132

Conread position: 9-489
Cow position: chr25:26896485-26895999 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 131

Conread position: 9-489
Cow position: chr25:41097758-41098244 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 151

Conread position: 10-489
Cow position: chr25:2516440-2515955 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 85

Conread position: 10-489
Cow position: chr25:10012620-10013114 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 149

Conread position: 11-322
Cow position: chr25:30525937-30526243 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 218
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 6, 113

Conread position: 12-483
Cow position: chr25:18265627-18265150 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 106

Conread position: 18-489
Cow position: chr25:33687778-33688271 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 140

Conread position: 24-489
Cow position: chr25:28275246-28275719 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 110

Conread position: 45-489
Cow position: chr25:4372315-4372743 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 110

Conread position: 46-298
Cow position: chr25:40141106-40141354 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 171
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 21, 26

Conread position: 49-322
Cow position: chr25:16401496-16401762 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 107

Conread position: 51-489
Cow position: chr25:37648808-37648378 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 89

Conread position: 55-489
Cow position: chr25:12833992-12834407 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 302
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 31, 13

Conread position: 55-489
Cow position: chr25:22151494-22151052 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 100

Conread position: 58-413
Cow position: chr25:22576437-22576785 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 263
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 27, 101

Conread position: 69-489
Cow position: chr25:2595141-2594719 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 86

Conread position: 84-488
Cow position: chr25:12938849-12939259 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 75

Conread position: 84-489
Cow position: chr25:23914024-23913619 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 9

Conread position: 87-299
Cow position: chr25:24776707-24776507 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 150, 66

Conread position: 112-467
Cow position: chr25:23366997-23366636 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 192, 41

Conread position: 155-489
Cow position: chr25:24459432-24459749 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 237, 19

Conread position: 159-489
Cow position: chr25:34502936-34503275 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 16

Conread position: 162-489
Cow position: chr25:33574448-33574780 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 107

Conread position: 180-466
Cow position: chr25:34237362-34237649 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 183
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 117, 86

Conread position: 201-489
Cow position: chr25:23998942-23999236 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 213
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 102, 50

Conread position: 209-489
Cow position: chr25:2497975-2497690 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 191
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 129, 85

Conread position: 212-489
Cow position: chr25:449569-449843 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 189
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 59

Conread position: 214-489
Cow position: chr25:18452532-18452249 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 107, 34

Conread position: 255-489
Cow position: chr25:21968368-21968127 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 72, 16

Conread position: 314-489
Cow position: chr25:30340236-30340413 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 69, 56

Conread position: 321-485
Cow position: chr25:10633895-10634055 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 37, 0

Show alignments to all cow chromosomes.