Cow genome map

Conread name: rpigca0_001979.y1

Conread position: 1-238
Cow position:
Alignm length: 247
Alignm identity: 191
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 52, 66

Conread position: 1-239
Cow position:
Alignm length: 247
Alignm identity: 174
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 52, 105

Conread position: 1-258
Cow position:
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 155

Conread position: 1-307
Cow position:
Alignm length: 314
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 133

Conread position: 1-320
Cow position:
Alignm length: 337
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 158

Conread position: 1-322
Cow position:
Alignm length: 335
Alignm identity: 235
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 52, 138

Conread position: 1-322
Cow position:
Alignm length: 328
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 158

Conread position: 1-368
Cow position:
Alignm length: 394
Alignm identity: 276
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 49, 8

Conread position: 1-379
Cow position:
Alignm length: 391
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 45

Conread position: 1-409
Cow position:
Alignm length: 431
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 109

Conread position: 1-432
Cow position:
Alignm length: 449
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-450
Cow position:
Alignm length: 470
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 155

Conread position: 1-450
Cow position:
Alignm length: 475
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 59

Conread position: 1-460
Cow position:
Alignm length: 467
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 52

Conread position: 1-474
Cow position:
Alignm length: 494
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 160

Conread position: 1-484
Cow position:
Alignm length: 502
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 160

Conread position: 1-485
Cow position:
Alignm length: 508
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 163

Conread position: 1-487
Cow position:
Alignm length: 503
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 133

Conread position: 1-487
Cow position:
Alignm length: 513
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 13

Conread position: 1-489
Cow position:
Alignm length: 512
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 113

Conread position: 1-489
Cow position:
Alignm length: 514
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 19

Conread position: 1-489
Cow position:
Alignm length: 506
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 509
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 132

Conread position: 1-489
Cow position:
Alignm length: 527
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 290

Conread position: 1-489
Cow position:
Alignm length: 517
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 168

Conread position: 1-489
Cow position:
Alignm length: 510
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 492
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 13

Conread position: 1-489
Cow position:
Alignm length: 513
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 88

Conread position: 1-489
Cow position:
Alignm length: 513
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 1-489
Cow position:
Alignm length: 514
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 15

Conread position: 1-489
Cow position:
Alignm length: 510
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 158

Conread position: 1-489
Cow position:
Alignm length: 512
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 103

Conread position: 1-489
Cow position:
Alignm length: 500
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 52

Conread position: 1-489
Cow position:
Alignm length: 527
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 515
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 159

Conread position: 1-489
Cow position:
Alignm length: 512
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 133

Conread position: 1-489
Cow position:
Alignm length: 504
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 160

Conread position: 1-489
Cow position:
Alignm length: 510
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 113

Conread position: 1-489
Cow position:
Alignm length: 512
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 1-489
Cow position:
Alignm length: 511
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 158

Conread position: 1-489
Cow position:
Alignm length: 508
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 157

Conread position: 1-489
Cow position:
Alignm length: 515
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 160

Conread position: 1-489
Cow position:
Alignm length: 508
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 156

Conread position: 1-489
Cow position:
Alignm length: 512
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 160

Conread position: 1-489
Cow position:
Alignm length: 514
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 15

Conread position: 2-299
Cow position:
Alignm length: 300
Alignm identity: 203
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 84, 49

Conread position: 3-489
Cow position:
Alignm length: 508
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 116

Conread position: 4-285
Cow position:
Alignm length: 289
Alignm identity: 208
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 47, 24

Conread position: 4-322
Cow position:
Alignm length: 322
Alignm identity: 226
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 82, 11

Conread position: 4-340
Cow position:
Alignm length: 347
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 80

Conread position: 4-489
Cow position:
Alignm length: 499
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 151

Conread position: 4-489
Cow position:
Alignm length: 516
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 167

Conread position: 4-489
Cow position:
Alignm length: 507
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 83

Conread position: 5-355
Cow position:
Alignm length: 366
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 122

Conread position: 8-453
Cow position:
Alignm length: 469
Alignm identity: 309
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 38, 19

Conread position: 9-326
Cow position:
Alignm length: 326
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 41, 132

Conread position: 9-489
Cow position:
Alignm length: 496
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 131

Conread position: 9-489
Cow position:
Alignm length: 498
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 151

Conread position: 10-489
Cow position:
Alignm length: 501
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 85

Conread position: 10-489
Cow position:
Alignm length: 502
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 149

Conread position: 11-322
Cow position:
Alignm length: 320
Alignm identity: 218
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 6, 113

Conread position: 12-483
Cow position:
Alignm length: 488
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 106

Conread position: 18-489
Cow position:
Alignm length: 504
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 140

Conread position: 24-489
Cow position:
Alignm length: 489
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 110

Conread position: 45-489
Cow position:
Alignm length: 452
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 110

Conread position: 46-298
Cow position:
Alignm length: 256
Alignm identity: 171
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 21, 26

Conread position: 49-322
Cow position:
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 107

Conread position: 51-489
Cow position:
Alignm length: 446
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 89

Conread position: 55-489
Cow position:
Alignm length: 445
Alignm identity: 302
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 31, 13

Conread position: 55-489
Cow position:
Alignm length: 452
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 100

Conread position: 58-413
Cow position:
Alignm length: 370
Alignm identity: 263
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 27, 101

Conread position: 69-489
Cow position:
Alignm length: 436
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 86

Conread position: 84-488
Cow position:
Alignm length: 420
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 75

Conread position: 84-489
Cow position:
Alignm length: 420
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 9

Conread position: 87-299
Cow position:
Alignm length: 214
Alignm identity: 165
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 150, 66

Conread position: 112-467
Cow position:
Alignm length: 375
Alignm identity: 267
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 192, 41

Conread position: 155-489
Cow position:
Alignm length: 336
Alignm identity: 228
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 237, 19

Conread position: 159-489
Cow position:
Alignm length: 346
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 16

Conread position: 162-489
Cow position:
Alignm length: 342
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 107

Conread position: 180-466
Cow position:
Alignm length: 290
Alignm identity: 183
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 117, 86

Conread position: 201-489
Cow position:
Alignm length: 303
Alignm identity: 213
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 102, 50

Conread position: 209-489
Cow position:
Alignm length: 291
Alignm identity: 191
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 129, 85

Conread position: 212-489
Cow position:
Alignm length: 285
Alignm identity: 189
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 59

Conread position: 214-489
Cow position:
Alignm length: 292
Alignm identity: 202
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 107, 34

Conread position: 255-489
Cow position:
Alignm length: 248
Alignm identity: 176
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 72, 16

Conread position: 314-489
Cow position:
Alignm length: 180
Alignm identity: 136
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 69, 56

Conread position: 321-485
Cow position:
Alignm length: 165
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 37, 0

Show alignments to all cow chromosomes.