Cow genome map
| Conread name: | rpigca0_001979.y1 |
| Conread position: | 1-242 |
| Cow position: | chr26:1341081-1340833 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 14, 184 |
| Conread position: | 1-256 |
| Cow position: | chr26:32671036-32671298 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 49, 85 |
| Conread position: | 1-275 |
| Cow position: | chr26:30569426-30569700 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 1-292 |
| Cow position: | chr26:15938081-15937794 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-292 |
| Cow position: | chr26:18918615-18918907 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 49, 167 |
| Conread position: | 1-307 |
| Cow position: | chr26:8746576-8746875 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 1-322 |
| Cow position: | chr26:13556512-13556824 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 159 |
| Conread position: | 1-322 |
| Cow position: | chr26:14395774-14396094 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 166 |
| Conread position: | 1-322 |
| Cow position: | chr26:14897792-14897474 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 165 |
| Conread position: | 1-322 |
| Cow position: | chr26:21539097-21538779 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-325 |
| Cow position: | chr26:23600331-23600646 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-356 |
| Cow position: | chr26:12965174-12965518 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 63 |
| Conread position: | 1-366 |
| Cow position: | chr26:3185307-3184947 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 1-394 |
| Cow position: | chr26:2610369-2610761 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 52, 133 |
| Conread position: | 1-433 |
| Cow position: | chr26:30725205-30725659 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 159 |
| Conread position: | 1-467 |
| Cow position: | chr26:25393489-25393013 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 174 |
| Conread position: | 1-484 |
| Cow position: | chr26:4324015-4324506 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 161 |
| Conread position: | 1-488 |
| Cow position: | chr26:7459263-7459760 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 86 |
| Conread position: | 1-489 |
| Cow position: | chr26:798842-799326 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 133 |
| Conread position: | 1-489 |
| Cow position: | chr26:1621351-1620858 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr26:6037976-6038479 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 278 |
| Conread position: | 1-489 |
| Cow position: | chr26:6843518-6844017 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr26:9558166-9558677 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 159 |
| Conread position: | 1-489 |
| Cow position: | chr26:10698810-10699293 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 136 |
| Conread position: | 1-489 |
| Cow position: | chr26:13806325-13806824 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 162 |
| Conread position: | 1-489 |
| Cow position: | chr26:17327867-17327365 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 154 |
| Conread position: | 1-489 |
| Cow position: | chr26:17428762-17429272 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 168 |
| Conread position: | 1-489 |
| Cow position: | chr26:22692089-22691593 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 155 |
| Conread position: | 1-489 |
| Cow position: | chr26:23591399-23590898 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr26:35424201-35423702 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 4-304 |
| Cow position: | chr26:14292337-14292032 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 158 |
| Conread position: | 4-481 |
| Cow position: | chr26:11370388-11369908 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 4-487 |
| Cow position: | chr26:21859283-21858807 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 46 |
| Conread position: | 5-407 |
| Cow position: | chr26:6475975-6476392 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 156 |
| Conread position: | 6-270 |
| Cow position: | chr26:15561511-15561767 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 43, 105 |
| Conread position: | 8-299 |
| Cow position: | chr26:27137555-27137848 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 8-303 |
| Cow position: | chr26:10966320-10966606 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 78, 40 |
| Conread position: | 8-317 |
| Cow position: | chr26:2770445-2770756 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 8-320 |
| Cow position: | chr26:4748472-4748774 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 42, 148 |
| Conread position: | 8-489 |
| Cow position: | chr26:26238697-26238205 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 154 |
| Conread position: | 8-489 |
| Cow position: | chr26:33949679-33950167 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 152 |
| Conread position: | 9-430 |
| Cow position: | chr26:3706258-3705844 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 151 |
| Conread position: | 9-489 |
| Cow position: | chr26:3755694-3755224 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 329 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 9-489 |
| Cow position: | chr26:8810551-8810079 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 152 |
| Conread position: | 9-489 |
| Cow position: | chr26:12662053-12662528 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 152 |
| Conread position: | 9-489 |
| Cow position: | chr26:13773739-13773256 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 10-302 |
| Cow position: | chr26:17538643-17538355 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 40, 96 |
| Conread position: | 10-339 |
| Cow position: | chr26:1613848-1614184 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 39, 246 |
| Conread position: | 11-322 |
| Cow position: | chr26:6097876-6098178 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 147 |
| Conread position: | 11-483 |
| Cow position: | chr26:19791716-19792177 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 317 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 37, 124 |
| Conread position: | 49-322 |
| Cow position: | chr26:16720128-16719860 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 108 |
| Conread position: | 49-467 |
| Cow position: | chr26:18877456-18877032 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 105 |
| Conread position: | 49-489 |
| Cow position: | chr26:17288460-17288013 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 68 |
| Conread position: | 66-489 |
| Cow position: | chr26:11269846-11269432 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 89 |
| Conread position: | 72-343 |
| Cow position: | chr26:11902970-11902711 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 83 |
| Conread position: | 72-487 |
| Cow position: | chr26:9836099-9835673 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 72-489 |
| Cow position: | chr26:1885645-1885215 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 82 |
| Conread position: | 72-489 |
| Cow position: | chr26:3556502-3556895 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 103-486 |
| Cow position: | chr26:2604331-2604718 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 273 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 190, 49 |
| Conread position: | 105-487 |
| Cow position: | chr26:10490829-10490449 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 16 |
| Conread position: | 180-322 |
| Cow position: | chr26:6837146-6837007 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 180-489 |
| Cow position: | chr26:17182586-17182286 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 115, 86 |
| Conread position: | 182-473 |
| Cow position: | chr26:3923960-3924260 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 39 |
| Conread position: | 188-489 |
| Cow position: | chr26:19795569-19795256 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 20 |
| Conread position: | 198-489 |
| Cow position: | chr26:3700466-3700174 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 216-489 |
| Cow position: | chr26:46161-46447 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 246-487 |
| Cow position: | chr26:18800705-18800954 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 24 |
| Conread position: | 259-486 |
| Cow position: | chr26:20186758-20186528 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 46, 103 |
| Conread position: | 276-489 |
| Cow position: | chr26:10011535-10011325 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 107, 34 |
| Conread position: | 324-488 |
| Cow position: | chr26:756245-756406 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 66, 35 |
Show alignments to all cow chromosomes.