Cow genome map
| Conread name: | rpigca0_001979.y1 |
| Conread position: | 1-238 |
| Cow position: | chr27:5853405-5853169 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 49, 68 |
| Conread position: | 1-262 |
| Cow position: | chr27:12147551-12147290 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 162 |
| Conread position: | 1-292 |
| Cow position: | chr27:3235390-3235097 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 20, 134 |
| Conread position: | 1-306 |
| Cow position: | chr27:9989222-9989524 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 133 |
| Conread position: | 1-320 |
| Cow position: | chr27:10324276-10324583 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 8 |
| Conread position: | 1-322 |
| Cow position: | chr27:13409655-13409336 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 1-354 |
| Cow position: | chr27:27742867-27742528 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 86, 52 |
| Conread position: | 1-409 |
| Cow position: | chr27:9090288-9089883 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 1-412 |
| Cow position: | chr27:16331830-16332243 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 150 |
| Conread position: | 1-449 |
| Cow position: | chr27:24055342-24054906 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 118 |
| Conread position: | 1-450 |
| Cow position: | chr27:4664987-4665422 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 161 |
| Conread position: | 1-463 |
| Cow position: | chr27:10306761-10306302 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 1-466 |
| Cow position: | chr27:25112825-25112344 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-479 |
| Cow position: | chr27:30783574-30783073 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 277 |
| Conread position: | 1-486 |
| Cow position: | chr27:9262619-9263116 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-487 |
| Cow position: | chr27:15272418-15272908 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 156 |
| Conread position: | 1-489 |
| Cow position: | chr27:344272-344765 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 1-489 |
| Cow position: | chr27:2332159-2331661 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 110 |
| Conread position: | 1-489 |
| Cow position: | chr27:3653041-3653542 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 162 |
| Conread position: | 1-489 |
| Cow position: | chr27:5914596-5914091 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 267 |
| Conread position: | 1-489 |
| Cow position: | chr27:8201595-8201096 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 160 |
| Conread position: | 1-489 |
| Cow position: | chr27:8973104-8972602 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 8 |
| Conread position: | 1-489 |
| Cow position: | chr27:9333326-9332836 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr27:10384089-10383606 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 160 |
| Conread position: | 1-489 |
| Cow position: | chr27:11481590-11481089 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr27:13901782-13901282 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr27:14297864-14297365 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 110 |
| Conread position: | 1-489 |
| Cow position: | chr27:15349294-15348820 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 107 |
| Conread position: | 1-489 |
| Cow position: | chr27:15871673-15872161 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr27:19423717-19424219 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 63 |
| Conread position: | 1-489 |
| Cow position: | chr27:19931899-19932408 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 1-489 |
| Cow position: | chr27:20811075-20810579 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr27:22330150-22329665 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 159 |
| Conread position: | 1-489 |
| Cow position: | chr27:24295601-24296111 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 159 |
| Conread position: | 1-489 |
| Cow position: | chr27:25800552-25801047 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 159 |
| Conread position: | 1-489 |
| Cow position: | chr27:26330586-26330090 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 154 |
| Conread position: | 1-489 |
| Cow position: | chr27:26785470-26784980 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 1-489 |
| Cow position: | chr27:27292052-27291547 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 165 |
| Conread position: | 4-365 |
| Cow position: | chr27:28984422-28984051 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 157 |
| Conread position: | 4-489 |
| Cow position: | chr27:8291501-8291001 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 4-489 |
| Cow position: | chr27:19523054-19523550 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 156 |
| Conread position: | 5-489 |
| Cow position: | chr27:11256032-11256507 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 6-428 |
| Cow position: | chr27:30677435-30677860 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 150 |
| Conread position: | 7-489 |
| Cow position: | chr27:1081524-1082004 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 57 |
| Conread position: | 8-320 |
| Cow position: | chr27:20866011-20865700 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 151 |
| Conread position: | 8-489 |
| Cow position: | chr27:21283600-21284076 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 143 |
| Conread position: | 9-320 |
| Cow position: | chr27:6620714-6621004 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 9-484 |
| Cow position: | chr27:25885450-25884988 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 151 |
| Conread position: | 9-487 |
| Cow position: | chr27:26856691-26856218 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 151 |
| Conread position: | 9-489 |
| Cow position: | chr27:30036529-30036027 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 153 |
| Conread position: | 11-481 |
| Cow position: | chr27:25676778-25677244 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 14-488 |
| Cow position: | chr27:14669848-14669356 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 113 |
| Conread position: | 16-484 |
| Cow position: | chr27:15866657-15867132 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 154 |
| Conread position: | 21-484 |
| Cow position: | chr27:1141334-1140861 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 134 |
| Conread position: | 38-489 |
| Cow position: | chr27:17565035-17565476 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 11 |
| Conread position: | 49-295 |
| Cow position: | chr27:18943496-18943253 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 105 |
| Conread position: | 49-483 |
| Cow position: | chr27:18954648-18954207 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 299 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 37, 106 |
| Conread position: | 51-489 |
| Cow position: | chr27:27930805-27930366 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 52-489 |
| Cow position: | chr27:5983428-5983872 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 71 |
| Conread position: | 53-489 |
| Cow position: | chr27:21392627-21392170 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 72 |
| Conread position: | 56-247 |
| Cow position: | chr27:8569173-8568980 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 59-485 |
| Cow position: | chr27:13317151-13316725 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 96 |
| Conread position: | 62-243 |
| Cow position: | chr27:7084675-7084851 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 63-489 |
| Cow position: | chr27:2682114-2681681 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 74-437 |
| Cow position: | chr27:12239648-12239278 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 84-293 |
| Cow position: | chr27:13844144-13844345 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 84-489 |
| Cow position: | chr27:3990232-3990642 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 68 |
| Conread position: | 155-489 |
| Cow position: | chr27:1536671-1536328 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 20 |
| Conread position: | 179-488 |
| Cow position: | chr27:14380784-14380463 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 91 |
| Conread position: | 192-484 |
| Cow position: | chr27:27045644-27045340 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 17, 80 |
| Conread position: | 196-475 |
| Cow position: | chr27:16787834-16788124 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 104, 78 |
| Conread position: | 233-489 |
| Cow position: | chr27:15697770-15697508 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 67, 37 |
| Conread position: | 251-479 |
| Cow position: | chr27:25971191-25971433 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 314-477 |
| Cow position: | chr27:9989869-9990033 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 320-489 |
| Cow position: | chr27:8262096-8261929 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 68, 20 |
| Conread position: | 321-489 |
| Cow position: | chr27:8429329-8429161 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 63, 43 |
Show alignments to all cow chromosomes.