Cow genome map
| Conread name: | rpigca0_010438.y1 |
| Conread position: | 2-191 |
| Cow position: | chr12:26316711-26316904 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 145, 27 |
| Conread position: | 3-131 |
| Cow position: | chr12:7651124-7650998 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 3-145 |
| Cow position: | chr12:15938785-15938647 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-145 |
| Cow position: | chr12:16738069-16738207 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-145 |
| Cow position: | chr12:31742302-31742163 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-179 |
| Cow position: | chr12:10939080-10939255 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 31 |
| Conread position: | 3-182 |
| Cow position: | chr12:5273655-5273472 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-182 |
| Cow position: | chr12:10490776-10490957 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 3-182 |
| Cow position: | chr12:11582865-11583053 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 3-182 |
| Cow position: | chr12:18010898-18011084 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 3-182 |
| Cow position: | chr12:21045590-21045408 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 3-182 |
| Cow position: | chr12:31605458-31605276 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-182 |
| Cow position: | chr12:35368093-35368274 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-183 |
| Cow position: | chr12:28763299-28763117 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 142, 17 |
| Conread position: | 3-186 |
| Cow position: | chr12:8718653-8718468 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-188 |
| Cow position: | chr12:18233439-18233245 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 116, 26 |
| Conread position: | 3-201 |
| Cow position: | chr12:32786522-32786319 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 27 |
| Conread position: | 3-201 |
| Cow position: | chr12:37770335-37770535 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-207 |
| Cow position: | chr12:37122980-37123183 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr12:7873088-7873305 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 3-217 |
| Cow position: | chr12:19040153-19039937 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 137, 27 |
| Conread position: | 3-217 |
| Cow position: | chr12:20317042-20316826 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr12:22340786-22341002 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr12:22594463-22594680 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 144, 55 |
| Conread position: | 3-217 |
| Cow position: | chr12:28650377-28650601 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 3-217 |
| Cow position: | chr12:38111195-38111410 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 3-217 |
| Cow position: | chr12:38678156-38678372 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr12:38894079-38894294 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr12:40270893-40270676 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 3-218 |
| Cow position: | chr12:24755559-24755343 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-224 |
| Cow position: | chr12:27176190-27175968 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 130, 26 |
| Conread position: | 3-224 |
| Cow position: | chr12:27192819-27193041 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 130, 26 |
| Conread position: | 3-248 |
| Cow position: | chr12:16606314-16606069 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-285 |
| Cow position: | chr12:23039527-23039244 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 3-292 |
| Cow position: | chr12:42167175-42167484 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 122, 21 |
| Conread position: | 4-175 |
| Cow position: | chr12:19715885-19715711 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 143, 16 |
| Conread position: | 4-183 |
| Cow position: | chr12:9142859-9143040 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 4-267 |
| Cow position: | chr12:31947660-31947937 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 141, 25 |
| Conread position: | 5-145 |
| Cow position: | chr12:42185671-42185808 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 5-192 |
| Cow position: | chr12:31261330-31261521 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 141, 24 |
| Conread position: | 6-229 |
| Cow position: | chr12:26777684-26777463 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 141, 23 |
| Conread position: | 9-217 |
| Cow position: | chr12:28572173-28572383 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 9-224 |
| Cow position: | chr12:3038987-3039201 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 138, 18 |
| Conread position: | 10-164 |
| Cow position: | chr12:19691767-19691609 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 137, 20 |
| Conread position: | 11-145 |
| Cow position: | chr12:31253199-31253069 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 17-217 |
| Cow position: | chr12:19865720-19865922 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 128, 12 |
| Conread position: | 27-141 |
| Cow position: | chr12:26223634-26223524 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 29-137 |
| Cow position: | chr12:3372195-3372301 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 43-192 |
| Cow position: | chr12:7885145-7884995 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 181-284 |
| Cow position: | chr12:15429872-15429768 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 181-284 |
| Cow position: | chr12:18421199-18421096 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 181-289 |
| Cow position: | chr12:22047197-22047304 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 181-290 |
| Cow position: | chr12:18020581-18020690 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 85, 105 |
| Conread position: | 181-292 |
| Cow position: | chr12:5905785-5905891 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.