Cow genome map
| Conread name: | rpigca0_010438.y1 |
| Conread position: | 2-177 |
| Cow position: | chr13:45353514-45353334 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 141, 27 |
| Conread position: | 2-201 |
| Cow position: | chr13:51527963-51528163 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 145, 27 |
| Conread position: | 3-106 |
| Cow position: | chr13:12875291-12875390 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-119 |
| Cow position: | chr13:26382738-26382852 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-139 |
| Cow position: | chr13:13177326-13177193 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-142 |
| Cow position: | chr13:17496568-17496704 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 126, 26 |
| Conread position: | 3-142 |
| Cow position: | chr13:21675616-21675482 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-143 |
| Cow position: | chr13:54703319-54703182 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-144 |
| Cow position: | chr13:57769542-57769680 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 3-145 |
| Cow position: | chr13:34112801-34112664 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-145 |
| Cow position: | chr13:37483781-37483922 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 102, 27 |
| Conread position: | 3-145 |
| Cow position: | chr13:46182255-46182117 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-145 |
| Cow position: | chr13:53574482-53574343 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 26 |
| Conread position: | 3-156 |
| Cow position: | chr13:57493701-57493855 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 3-180 |
| Cow position: | chr13:16972952-16973133 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 3-181 |
| Cow position: | chr13:34375738-34375556 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 108, 26 |
| Conread position: | 3-181 |
| Cow position: | chr13:48164995-48165175 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 144, 25 |
| Conread position: | 3-182 |
| Cow position: | chr13:2558028-2558210 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-182 |
| Cow position: | chr13:27027295-27027477 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 139, 26 |
| Conread position: | 3-182 |
| Cow position: | chr13:31814342-31814163 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-182 |
| Cow position: | chr13:40722201-40722389 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 3-182 |
| Cow position: | chr13:45072938-45073121 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 3-183 |
| Cow position: | chr13:17456788-17456970 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 142, 27 |
| Conread position: | 3-193 |
| Cow position: | chr13:23856720-23856527 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 144, 24 |
| Conread position: | 3-193 |
| Cow position: | chr13:31808995-31808801 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 112, 26 |
| Conread position: | 3-194 |
| Cow position: | chr13:17567506-17567699 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 3-197 |
| Cow position: | chr13:19393736-19393540 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-199 |
| Cow position: | chr13:971413-971612 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-201 |
| Cow position: | chr13:21988626-21988822 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 144, 16 |
| Conread position: | 3-207 |
| Cow position: | chr13:16015298-16015092 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-216 |
| Cow position: | chr13:11821803-11821584 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 26 |
| Conread position: | 3-216 |
| Cow position: | chr13:20880172-20880376 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 3-217 |
| Cow position: | chr13:1011815-1011599 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr13:2800392-2800608 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr13:19022728-19022514 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr13:20175221-20175006 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 3-217 |
| Cow position: | chr13:20440117-20440334 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 141, 55 |
| Conread position: | 3-217 |
| Cow position: | chr13:34941174-34941390 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 3-217 |
| Cow position: | chr13:49805450-49805235 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr13:52585541-52585756 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 142, 27 |
| Conread position: | 3-220 |
| Cow position: | chr13:21235207-21235425 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 3-220 |
| Cow position: | chr13:34282166-34281944 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 3-224 |
| Cow position: | chr13:20571209-20570983 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 144, 25 |
| Conread position: | 3-224 |
| Cow position: | chr13:22085277-22085500 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 127, 19 |
| Conread position: | 3-236 |
| Cow position: | chr13:19178764-19178524 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 26 |
| Conread position: | 3-248 |
| Cow position: | chr13:31607931-31607682 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 140, 26 |
| Conread position: | 4-155 |
| Cow position: | chr13:32221373-32221221 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 137, 26 |
| Conread position: | 4-183 |
| Cow position: | chr13:34262901-34263083 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 139, 24 |
| Conread position: | 4-207 |
| Cow position: | chr13:38283501-38283707 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 4-217 |
| Cow position: | chr13:40943725-40943510 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 126, 25 |
| Conread position: | 4-218 |
| Cow position: | chr13:4420792-4420576 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 5-192 |
| Cow position: | chr13:32825926-32826117 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 142, 24 |
| Conread position: | 5-217 |
| Cow position: | chr13:10928512-10928726 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 118, 21 |
| Conread position: | 7-182 |
| Cow position: | chr13:5261871-5262050 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 136, 21 |
| Conread position: | 7-217 |
| Cow position: | chr13:9734428-9734212 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 108, 22 |
| Conread position: | 9-182 |
| Cow position: | chr13:24099510-24099687 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 138, 20 |
| Conread position: | 9-183 |
| Cow position: | chr13:21210405-21210227 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 9-203 |
| Cow position: | chr13:5229043-5228847 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 138, 20 |
| Conread position: | 10-207 |
| Cow position: | chr13:48038602-48038403 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 137, 20 |
| Conread position: | 11-192 |
| Cow position: | chr13:20805362-20805177 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 136, 18 |
| Conread position: | 11-218 |
| Cow position: | chr13:17820788-17820994 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 136, 18 |
| Conread position: | 14-217 |
| Cow position: | chr13:3353518-3353724 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 96, 15 |
| Conread position: | 16-145 |
| Cow position: | chr13:31343371-31343498 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 17-183 |
| Cow position: | chr13:3701901-3701731 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 131, 12 |
| Conread position: | 20-182 |
| Cow position: | chr13:19426232-19426398 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 20-228 |
| Cow position: | chr13:20863556-20863762 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 81, 9 |
| Conread position: | 21-182 |
| Cow position: | chr13:5621869-5621704 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 126, 8 |
| Conread position: | 21-182 |
| Cow position: | chr13:24729413-24729248 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 126, 8 |
| Conread position: | 29-182 |
| Cow position: | chr13:22117060-22116903 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 118, 29 |
| Conread position: | 29-182 |
| Cow position: | chr13:24156326-24156169 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 118, 29 |
| Conread position: | 31-192 |
| Cow position: | chr13:14063042-14063208 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 113, 27 |
| Conread position: | 33-182 |
| Cow position: | chr13:25453624-25453470 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 178-280 |
| Cow position: | chr13:32826185-32826287 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 181-284 |
| Cow position: | chr13:37484051-37484154 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 181-290 |
| Cow position: | chr13:21241873-21241978 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 74 |
| Conread position: | 181-290 |
| Cow position: | chr13:25531569-25531673 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 181-292 |
| Cow position: | chr13:16155498-16155608 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 181-292 |
| Cow position: | chr13:40491452-40491340 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
Show alignments to all cow chromosomes.