Cow genome map

Conread name: rpigca0_010438.y1

Conread position: 3-141
Cow position: chr15:42194354-42194489 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 3-144
Cow position: chr15:25666628-25666766 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 107, 26

Conread position: 3-145
Cow position: chr15:4918473-4918612 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 3-145
Cow position: chr15:22752046-22751907 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 3-145
Cow position: chr15:27128199-27128060 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 3-156
Cow position: chr15:24821792-24821945 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 142, 23

Conread position: 3-156
Cow position: chr15:26933425-26933584 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 111, 26

Conread position: 3-156
Cow position: chr15:33235766-33235612 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 144, 26

Conread position: 3-175
Cow position: chr15:19960781-19960602 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 26

Conread position: 3-182
Cow position: chr15:1602342-1602523 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 140, 26

Conread position: 3-182
Cow position: chr15:6082057-6082239 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr15:8028636-8028453 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr15:9135393-9135575 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 143, 27

Conread position: 3-182
Cow position: chr15:15040850-15041030 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 147
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr15:15215887-15215700 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 113, 33

Conread position: 3-182
Cow position: chr15:15234169-15233985 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr15:19119029-19119213 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 26

Conread position: 3-182
Cow position: chr15:24797209-24797397 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 84, 26

Conread position: 3-182
Cow position: chr15:33455681-33455863 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 107, 31

Conread position: 3-182
Cow position: chr15:35416984-35417168 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 120, 26

Conread position: 3-182
Cow position: chr15:36781722-36781905 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr15:39406546-39406364 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 144, 10

Conread position: 3-182
Cow position: chr15:44073827-44074011 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 142, 26

Conread position: 3-182
Cow position: chr15:47842681-47842862 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 145, 26

Conread position: 3-182
Cow position: chr15:50344354-50344173 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 142, 26

Conread position: 3-183
Cow position: chr15:4953797-4953980 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 144, 26

Conread position: 3-191
Cow position: chr15:22168650-22168458 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 144, 27

Conread position: 3-192
Cow position: chr15:7941798-7941991 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 144, 26

Conread position: 3-192
Cow position: chr15:14506011-14505821 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 142, 24

Conread position: 3-192
Cow position: chr15:17236288-17236094 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 141, 26

Conread position: 3-192
Cow position: chr15:21902857-21903049 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 144, 23

Conread position: 3-192
Cow position: chr15:23332276-23332469 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 27

Conread position: 3-192
Cow position: chr15:23703353-23703158 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 135, 26

Conread position: 3-192
Cow position: chr15:38899008-38898816 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 140, 26

Conread position: 3-192
Cow position: chr15:53342401-53342595 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 133, 26

Conread position: 3-198
Cow position: chr15:363594-363403 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 145, 26

Conread position: 3-199
Cow position: chr15:21894404-21894207 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 144, 26

Conread position: 3-201
Cow position: chr15:10336329-10336138 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 151, 26

Conread position: 3-202
Cow position: chr15:19910961-19910760 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 144, 23

Conread position: 3-202
Cow position: chr15:23567537-23567740 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 88, 26

Conread position: 3-202
Cow position: chr15:24129263-24129068 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 144, 26

Conread position: 3-202
Cow position: chr15:25907813-25907615 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 144, 26

Conread position: 3-202
Cow position: chr15:38846674-38846473 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 144, 26

Conread position: 3-207
Cow position: chr15:6970564-6970359 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 142, 26

Conread position: 3-207
Cow position: chr15:25208176-25208386 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 58

Conread position: 3-207
Cow position: chr15:38102914-38103120 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 143, 26

Conread position: 3-207
Cow position: chr15:53135380-53135174 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 142, 26

Conread position: 3-217
Cow position: chr15:608748-608527 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 26

Conread position: 3-217
Cow position: chr15:5498445-5498658 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr15:13669318-13669533 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr15:16927464-16927681 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 127, 26

Conread position: 3-217
Cow position: chr15:20533863-20534079 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 113, 15

Conread position: 3-217
Cow position: chr15:33976105-33976322 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 167
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 21, 27

Conread position: 3-217
Cow position: chr15:38395203-38394993 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 108, 26

Conread position: 3-217
Cow position: chr15:38876091-38876304 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr15:41360376-41360597 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 120, 26

Conread position: 3-217
Cow position: chr15:49258656-49258442 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 142, 27

Conread position: 3-222
Cow position: chr15:15707531-15707753 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 144, 26

Conread position: 3-222
Cow position: chr15:27747133-27746912 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 142, 26

Conread position: 3-222
Cow position: chr15:33511431-33511210 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 144, 25

Conread position: 3-224
Cow position: chr15:22095694-22095474 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 144, 26

Conread position: 3-224
Cow position: chr15:24993919-24994141 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 144, 26

Conread position: 3-224
Cow position: chr15:33228676-33228452 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 73, 26

Conread position: 3-229
Cow position: chr15:1329519-1329744 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 142, 27

Conread position: 3-229
Cow position: chr15:6530251-6530477 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 144, 26

Conread position: 3-243
Cow position: chr15:36355358-36355118 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 144, 26

Conread position: 3-248
Cow position: chr15:143646-143893 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 108, 26

Conread position: 3-261
Cow position: chr15:10088816-10088558 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 142, 16

Conread position: 4-201
Cow position: chr15:31949585-31949387 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 143, 25

Conread position: 4-217
Cow position: chr15:2969134-2968921 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 143, 25

Conread position: 5-182
Cow position: chr15:7841703-7841885 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 140, 24

Conread position: 5-182
Cow position: chr15:10243505-10243686 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 142, 24

Conread position: 5-183
Cow position: chr15:52197731-52197912 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 141, 21

Conread position: 5-269
Cow position: chr15:24617148-24616880 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 184
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 142, 24

Conread position: 6-180
Cow position: chr15:45220755-45220571 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 105, 23

Conread position: 9-184
Cow position: chr15:41087283-41087461 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 138, 20

Conread position: 9-193
Cow position: chr15:37382204-37382015 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 114, 20

Conread position: 10-217
Cow position: chr15:36643311-36643522 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 36, 19

Conread position: 10-229
Cow position: chr15:50957213-50957433 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 137, 19

Conread position: 11-181
Cow position: chr15:45323587-45323412 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 62, 18

Conread position: 11-182
Cow position: chr15:28039323-28039156 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 142, 24

Conread position: 11-197
Cow position: chr15:29340714-29340527 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 134, 15

Conread position: 11-229
Cow position: chr15:1776550-1776769 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 135, 23

Conread position: 15-217
Cow position: chr15:5692285-5692082 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 132, 14

Conread position: 17-182
Cow position: chr15:35643050-35642880 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 130, 41

Conread position: 17-194
Cow position: chr15:24968360-24968180 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 100, 12

Conread position: 22-217
Cow position: chr15:42143417-42143220 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 125, 7

Conread position: 22-278
Cow position: chr15:36392231-36391972 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 54, 7

Conread position: 29-217
Cow position: chr15:276305-276121 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 118, 30

Conread position: 36-229
Cow position: chr15:14879446-14879639 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 111, 23

Conread position: 52-222
Cow position: chr15:35946823-35946653 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 95, 39

Conread position: 177-277
Cow position: chr15:23703100-23703000 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 181-282
Cow position: chr15:6905864-6905763 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 181-290
Cow position: chr15:11658242-11658350 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 96
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 104, 0

Conread position: 181-290
Cow position: chr15:14871069-14870961 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 93
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 181-290
Cow position: chr15:37381954-37381846 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 104, 0

Show alignments to all cow chromosomes.