Cow genome map

Conread name: rpigca0_010438.y1

Conread position: 1-145
Cow position: chr18:32245257-32245116 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 2-196
Cow position: chr18:38090116-38089915 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 122, 27

Conread position: 3-113
Cow position: chr18:10861942-10861834 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 3-134
Cow position: chr18:33407108-33407236 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 3-140
Cow position: chr18:31711998-31711861 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 50, 26

Conread position: 3-142
Cow position: chr18:11694417-11694552 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 3-142
Cow position: chr18:45104957-45104821 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 26, 0

Conread position: 3-144
Cow position: chr18:6309530-6309666 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 3-145
Cow position: chr18:10516651-10516790 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 3-145
Cow position: chr18:29028535-29028394 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 71, 26

Conread position: 3-145
Cow position: chr18:37002105-37002244 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 3-146
Cow position: chr18:27529833-27529974 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 107, 48

Conread position: 3-148
Cow position: chr18:13292978-13293121 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 15, 27

Conread position: 3-156
Cow position: chr18:81234-81387 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 43, 26

Conread position: 3-175
Cow position: chr18:24978098-24977926 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 144, 26

Conread position: 3-181
Cow position: chr18:40758682-40758864 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 140, 26

Conread position: 3-182
Cow position: chr18:268579-268396 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 145, 26

Conread position: 3-182
Cow position: chr18:11680161-11680343 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr18:12118374-12118192 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr18:14048193-14048365 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 3-182
Cow position: chr18:16378440-16378624 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 140, 26

Conread position: 3-182
Cow position: chr18:27457284-27457103 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr18:28292289-28292105 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr18:29862792-29862609 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 142, 26

Conread position: 3-182
Cow position: chr18:35012835-35012653 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 140, 26

Conread position: 3-182
Cow position: chr18:39875820-39875638 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 143, 19

Conread position: 3-182
Cow position: chr18:48451144-48451331 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 73, 27

Conread position: 3-183
Cow position: chr18:7076240-7076422 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 144, 26

Conread position: 3-183
Cow position: chr18:25206827-25206644 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 144, 26

Conread position: 3-183
Cow position: chr18:48291409-48291226 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 144, 26

Conread position: 3-183
Cow position: chr18:49542959-49543143 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 144, 27

Conread position: 3-192
Cow position: chr18:22275572-22275379 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 142, 26

Conread position: 3-192
Cow position: chr18:22790597-22790407 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 144, 26

Conread position: 3-192
Cow position: chr18:28658438-28658245 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 147, 31

Conread position: 3-192
Cow position: chr18:31082865-31082675 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 144, 26

Conread position: 3-192
Cow position: chr18:37024088-37023893 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 55, 26

Conread position: 3-193
Cow position: chr18:6878157-6877965 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 144, 26

Conread position: 3-201
Cow position: chr18:7649463-7649662 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 144, 26

Conread position: 3-201
Cow position: chr18:9365360-9365560 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 144, 26

Conread position: 3-201
Cow position: chr18:37691126-37690927 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 143, 26

Conread position: 3-201
Cow position: chr18:42223801-42224004 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 56, 26

Conread position: 3-201
Cow position: chr18:47183820-47183615 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 26

Conread position: 3-207
Cow position: chr18:30793930-30794131 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 144, 26

Conread position: 3-207
Cow position: chr18:36649192-36649403 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 99, 26

Conread position: 3-217
Cow position: chr18:601700-601484 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 144, 27

Conread position: 3-217
Cow position: chr18:4950029-4950238 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 143, 23

Conread position: 3-217
Cow position: chr18:6829594-6829377 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr18:16094695-16094909 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 142, 26

Conread position: 3-217
Cow position: chr18:16155028-16154810 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 56, 26

Conread position: 3-217
Cow position: chr18:23659089-23658873 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 144, 27

Conread position: 3-217
Cow position: chr18:23700399-23700183 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 142, 33

Conread position: 3-217
Cow position: chr18:42966308-42966524 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr18:43950310-43950525 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 112, 27

Conread position: 3-218
Cow position: chr18:55590003-55589788 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 144, 23

Conread position: 3-220
Cow position: chr18:19760975-19761195 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 99, 25

Conread position: 3-225
Cow position: chr18:727102-727327 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 140, 26

Conread position: 3-229
Cow position: chr18:29759188-29759419 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 142, 26

Conread position: 3-242
Cow position: chr18:36233058-36232820 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 144, 26

Conread position: 3-289
Cow position: chr18:1955054-1954753 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 215
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 144, 26

Conread position: 4-139
Cow position: chr18:45572570-45572702 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 4-183
Cow position: chr18:51191281-51191098 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 149
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 142, 25

Conread position: 4-192
Cow position: chr18:11779139-11779328 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 143, 25

Conread position: 4-207
Cow position: chr18:8967475-8967680 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 143, 25

Conread position: 4-217
Cow position: chr18:9557556-9557342 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 132, 25

Conread position: 4-217
Cow position: chr18:38984850-38985062 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 141, 25

Conread position: 5-221
Cow position: chr18:33606103-33606320 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 142, 24

Conread position: 7-182
Cow position: chr18:10097632-10097819 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 112, 22

Conread position: 9-182
Cow position: chr18:36907698-36907521 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 104, 20

Conread position: 9-182
Cow position: chr18:36912224-36912047 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 104, 20

Conread position: 9-217
Cow position: chr18:10574529-10574739 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 103, 20

Conread position: 10-207
Cow position: chr18:28929621-28929422 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 135, 19

Conread position: 11-175
Cow position: chr18:51406415-51406245 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 48, 18

Conread position: 12-217
Cow position: chr18:4540394-4540186 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 32, 6

Conread position: 16-180
Cow position: chr18:24021875-24022042 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 129, 6

Conread position: 16-201
Cow position: chr18:7964714-7964901 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 130, 13

Conread position: 17-207
Cow position: chr18:19193861-19193669 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 130, 20

Conread position: 21-145
Cow position: chr18:30186430-30186309 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 33-163
Cow position: chr18:18919439-18919304 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 112, 25

Conread position: 33-217
Cow position: chr18:44484554-44484366 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 114, 54

Conread position: 34-217
Cow position: chr18:9007648-9007835 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 112, 24

Conread position: 41-207
Cow position: chr18:28101133-28101302 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 106, 18

Conread position: 181-283
Cow position: chr18:11671543-11671645 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 83
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 181-290
Cow position: chr18:19619682-19619790 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 94
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 104, 0

Conread position: 181-290
Cow position: chr18:28101360-28101469 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 95
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 75, 105

Conread position: 181-290
Cow position: chr18:35535552-35535445 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 0

Show alignments to all cow chromosomes.