Cow genome map
| Conread name: | rpigca0_010438.y1 |
| Conread position: | 3-141 |
| Cow position: | chr19:55011395-55011530 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-144 |
| Cow position: | chr19:33822872-33823010 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-151 |
| Cow position: | chr19:14592563-14592709 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 3-159 |
| Cow position: | chr19:34655083-34654927 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-161 |
| Cow position: | chr19:33884698-33884538 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 145, 26 |
| Conread position: | 3-180 |
| Cow position: | chr19:730240-730058 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-180 |
| Cow position: | chr19:39665106-39664926 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 143, 27 |
| Conread position: | 3-181 |
| Cow position: | chr19:18016402-18016211 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 3-182 |
| Cow position: | chr19:3246544-3246360 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 3-182 |
| Cow position: | chr19:5434558-5434380 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-182 |
| Cow position: | chr19:32457133-32457317 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 107, 26 |
| Conread position: | 3-182 |
| Cow position: | chr19:33747344-33747527 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-182 |
| Cow position: | chr19:34282827-34283001 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-182 |
| Cow position: | chr19:34905502-34905321 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 3-182 |
| Cow position: | chr19:42571760-42571579 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-182 |
| Cow position: | chr19:42694503-42694686 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 143, 27 |
| Conread position: | 3-182 |
| Cow position: | chr19:52214580-52214767 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 74, 26 |
| Conread position: | 3-183 |
| Cow position: | chr19:18786835-18786649 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 3-183 |
| Cow position: | chr19:36059402-36059586 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-183 |
| Cow position: | chr19:55246938-55247121 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-185 |
| Cow position: | chr19:38392290-38392476 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 143, 31 |
| Conread position: | 3-192 |
| Cow position: | chr19:28349284-28349092 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 3-192 |
| Cow position: | chr19:36721826-36722019 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 3-195 |
| Cow position: | chr19:20433420-20433225 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 145, 32 |
| Conread position: | 3-195 |
| Cow position: | chr19:33932653-33932457 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 143, 48 |
| Conread position: | 3-196 |
| Cow position: | chr19:20661925-20661730 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 3-201 |
| Cow position: | chr19:31847118-31846919 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-207 |
| Cow position: | chr19:32450555-32450761 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 141, 26 |
| Conread position: | 3-217 |
| Cow position: | chr19:1901513-1901294 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 106, 26 |
| Conread position: | 3-217 |
| Cow position: | chr19:8375808-8375594 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr19:10212873-10213089 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr19:14572857-14573077 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 26 |
| Conread position: | 3-217 |
| Cow position: | chr19:43431829-43431611 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 3-218 |
| Cow position: | chr19:39056738-39056953 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 136, 13 |
| Conread position: | 3-222 |
| Cow position: | chr19:19500061-19499840 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 3-224 |
| Cow position: | chr19:4448034-4448251 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 3-224 |
| Cow position: | chr19:12697818-12698041 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 3-224 |
| Cow position: | chr19:47557627-47557851 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-228 |
| Cow position: | chr19:7637730-7637505 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 3-229 |
| Cow position: | chr19:20671413-20671185 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-278 |
| Cow position: | chr19:36189706-36189987 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 3-280 |
| Cow position: | chr19:8033021-8033306 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 4-201 |
| Cow position: | chr19:37562512-37562314 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 141, 25 |
| Conread position: | 4-217 |
| Cow position: | chr19:15766601-15766811 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 134, 25 |
| Conread position: | 4-217 |
| Cow position: | chr19:25289080-25288867 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 4-220 |
| Cow position: | chr19:34287303-34287523 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 8-196 |
| Cow position: | chr19:9582802-9582993 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 139, 26 |
| Conread position: | 9-182 |
| Cow position: | chr19:13635536-13635713 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 138, 20 |
| Conread position: | 9-217 |
| Cow position: | chr19:10948117-10947906 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 90, 20 |
| Conread position: | 10-236 |
| Cow position: | chr19:39697572-39697799 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 16-183 |
| Cow position: | chr19:42417371-42417542 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 131, 13 |
| Conread position: | 16-217 |
| Cow position: | chr19:36844728-36844933 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 94, 13 |
| Conread position: | 19-193 |
| Cow position: | chr19:35018738-35018561 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 127, 10 |
| Conread position: | 20-193 |
| Cow position: | chr19:11376926-11376750 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 29-182 |
| Cow position: | chr19:47968808-47968965 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 118, 29 |
| Conread position: | 29-217 |
| Cow position: | chr19:51393254-51393445 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 118, 29 |
| Conread position: | 48-182 |
| Cow position: | chr19:23785725-23785863 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 97, 43 |
| Conread position: | 51-182 |
| Cow position: | chr19:30232282-30232416 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 177-281 |
| Cow position: | chr19:20310879-20310779 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 179-290 |
| Cow position: | chr19:35018494-35018385 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 181-284 |
| Cow position: | chr19:25696452-25696349 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 181-284 |
| Cow position: | chr19:25955087-25954984 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 181-289 |
| Cow position: | chr19:34955942-34955835 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 181-290 |
| Cow position: | chr19:33306851-33306959 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 181-292 |
| Cow position: | chr19:37633597-37633485 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 108, 0 |
Show alignments to all cow chromosomes.