Cow genome map

Conread name: rpigca0_010438.y1

Conread position: 1-225
Cow position: chr21:26829673-26829445 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 28

Conread position: 1-232
Cow position: chr21:26744393-26744159 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 146, 28

Conread position: 3-133
Cow position: chr21:23683108-23683235 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 3-144
Cow position: chr21:40265208-40265346 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 3-145
Cow position: chr21:45611-45750 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 3-145
Cow position: chr21:10000723-10000584 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 3-145
Cow position: chr21:13111231-13111092 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 3-161
Cow position: chr21:31661622-31661786 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 113, 26

Conread position: 3-168
Cow position: chr21:29955682-29955513 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 144, 26

Conread position: 3-173
Cow position: chr21:2261115-2260941 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 144, 26

Conread position: 3-174
Cow position: chr21:33350269-33350442 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 65, 26

Conread position: 3-175
Cow position: chr21:4279201-4279376 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 144, 26

Conread position: 3-175
Cow position: chr21:15545795-15545623 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 142, 13

Conread position: 3-179
Cow position: chr21:684054-684225 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 138, 26

Conread position: 3-179
Cow position: chr21:38917801-38917979 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 144, 26

Conread position: 3-181
Cow position: chr21:12153701-12153881 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 144, 26

Conread position: 3-181
Cow position: chr21:18828771-18828589 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 140, 27

Conread position: 3-182
Cow position: chr21:2810547-2810365 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 145, 26

Conread position: 3-182
Cow position: chr21:12802217-12802032 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 119, 27

Conread position: 3-182
Cow position: chr21:19237284-19237467 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr21:21908013-21907830 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr21:23192953-23192769 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 143, 26

Conread position: 3-182
Cow position: chr21:24111063-24110879 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 62, 26

Conread position: 3-182
Cow position: chr21:29855240-29855423 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 143, 26

Conread position: 3-182
Cow position: chr21:34391400-34391217 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 142, 26

Conread position: 3-182
Cow position: chr21:44281267-44281082 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 144, 26

Conread position: 3-183
Cow position: chr21:8126219-8126037 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 142, 26

Conread position: 3-183
Cow position: chr21:13585553-13585366 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 127, 26

Conread position: 3-183
Cow position: chr21:25473068-25473252 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 145
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 144, 26

Conread position: 3-183
Cow position: chr21:27863954-27863769 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 108, 27

Conread position: 3-183
Cow position: chr21:28617167-28617352 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 140, 26

Conread position: 3-183
Cow position: chr21:28625675-28625857 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 142, 26

Conread position: 3-183
Cow position: chr21:30849371-30849194 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 151, 33

Conread position: 3-183
Cow position: chr21:48638177-48637996 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 3-184
Cow position: chr21:20925939-20925754 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 142, 26

Conread position: 3-192
Cow position: chr21:297289-297482 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 142, 26

Conread position: 3-192
Cow position: chr21:8981559-8981365 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 107, 26

Conread position: 3-192
Cow position: chr21:36909383-36909580 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 26

Conread position: 3-199
Cow position: chr21:4905403-4905202 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 144, 26

Conread position: 3-199
Cow position: chr21:28210752-28210950 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 3-207
Cow position: chr21:15584834-15584627 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 133, 26

Conread position: 3-207
Cow position: chr21:18979289-18979084 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 144, 26

Conread position: 3-216
Cow position: chr21:42914176-42913965 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 143, 23

Conread position: 3-217
Cow position: chr21:2927666-2927451 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr21:4998919-4998703 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr21:10571166-10571382 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 142, 26

Conread position: 3-217
Cow position: chr21:20262770-20262552 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 26

Conread position: 3-217
Cow position: chr21:22464355-22464572 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 140, 26

Conread position: 3-217
Cow position: chr21:27230225-27230010 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 143, 26

Conread position: 3-217
Cow position: chr21:28768870-28768654 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr21:39401160-39401382 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 113, 26

Conread position: 3-217
Cow position: chr21:42540655-42540438 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 144, 27

Conread position: 3-222
Cow position: chr21:2420071-2420291 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 144, 26

Conread position: 3-222
Cow position: chr21:22855788-22856006 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 144, 26

Conread position: 3-222
Cow position: chr21:33209767-33209986 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 144, 26

Conread position: 3-222
Cow position: chr21:37299033-37299252 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 144, 26

Conread position: 3-224
Cow position: chr21:5595229-5595453 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 144, 26

Conread position: 3-224
Cow position: chr21:33983243-33983021 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 142, 26

Conread position: 3-226
Cow position: chr21:20243727-20243498 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 91, 26

Conread position: 3-236
Cow position: chr21:33620326-33620549 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 84, 0

Conread position: 3-238
Cow position: chr21:3813901-3813663 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 142, 27

Conread position: 3-248
Cow position: chr21:2877946-2877697 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 142, 26

Conread position: 3-292
Cow position: chr21:2767938-2767655 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 194
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 283, 26

Conread position: 4-181
Cow position: chr21:9218501-9218682 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 21, 26

Conread position: 4-183
Cow position: chr21:34835888-34835704 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 139, 25

Conread position: 4-194
Cow position: chr21:29214589-29214395 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 143, 54

Conread position: 4-202
Cow position: chr21:46132429-46132228 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 116, 25

Conread position: 4-217
Cow position: chr21:13897755-13897975 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 60

Conread position: 4-217
Cow position: chr21:33420149-33419933 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 58, 25

Conread position: 5-175
Cow position: chr21:24130654-24130828 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 142, 24

Conread position: 5-201
Cow position: chr21:2293295-2293096 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 75, 24

Conread position: 5-201
Cow position: chr21:14727624-14727814 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 24, 0

Conread position: 5-217
Cow position: chr21:27146637-27146423 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 141, 25

Conread position: 5-260
Cow position: chr21:28477193-28477454 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 184
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 142, 24

Conread position: 9-140
Cow position: chr21:3381688-3381558 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 50, 20

Conread position: 9-183
Cow position: chr21:44657890-44658068 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 137, 20

Conread position: 9-188
Cow position: chr21:26681366-26681184 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 138, 20

Conread position: 9-217
Cow position: chr21:13300719-13300934 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 82

Conread position: 11-183
Cow position: chr21:30250631-30250455 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 135, 18

Conread position: 12-201
Cow position: chr21:19702099-19702290 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 135, 17

Conread position: 13-218
Cow position: chr21:3047240-3047447 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 134, 16

Conread position: 18-182
Cow position: chr21:5455409-5455237 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 12

Conread position: 18-222
Cow position: chr21:24222958-24222754 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 129, 11

Conread position: 20-161
Cow position: chr21:41957600-41957458 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 126, 9

Conread position: 21-217
Cow position: chr21:33933800-33933602 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 89, 8

Conread position: 27-140
Cow position: chr21:19608827-19608938 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 29-217
Cow position: chr21:31040848-31040657 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 118, 29

Conread position: 29-242
Cow position: chr21:2495580-2495365 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 116, 30

Conread position: 34-182
Cow position: chr21:24796441-24796285 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 59

Conread position: 43-217
Cow position: chr21:40244039-40244216 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 100, 15

Conread position: 44-216
Cow position: chr21:2366947-2367121 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 103, 14

Conread position: 180-282
Cow position: chr21:30231873-30231771 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 183-284
Cow position: chr21:393853-393954 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.