Cow genome map
| Conread name: | rpigca0_010438.y1 |
| Conread position: | 1-146 |
| Cow position: | chr24:5652489-5652347 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-217 |
| Cow position: | chr24:24002457-24002672 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 143, 11 |
| Conread position: | 3-129 |
| Cow position: | chr24:39482980-39483103 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-145 |
| Cow position: | chr24:25543403-25543265 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-145 |
| Cow position: | chr24:29375817-29375956 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-145 |
| Cow position: | chr24:34396663-34396523 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-180 |
| Cow position: | chr24:26387984-26387803 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-181 |
| Cow position: | chr24:27763281-27763462 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-181 |
| Cow position: | chr24:31816032-31816212 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 3-182 |
| Cow position: | chr24:6450016-6450193 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-182 |
| Cow position: | chr24:19815605-19815423 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-182 |
| Cow position: | chr24:27053011-27052830 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 3-182 |
| Cow position: | chr24:27632868-27633050 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 140, 23 |
| Conread position: | 3-182 |
| Cow position: | chr24:28601253-28601070 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 133, 26 |
| Conread position: | 3-182 |
| Cow position: | chr24:30484456-30484273 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 140, 26 |
| Conread position: | 3-182 |
| Cow position: | chr24:32693183-32693366 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-182 |
| Cow position: | chr24:33239074-33238888 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 3-182 |
| Cow position: | chr24:45216637-45216454 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-192 |
| Cow position: | chr24:7001590-7001398 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-192 |
| Cow position: | chr24:40771596-40771789 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 139, 26 |
| Conread position: | 3-195 |
| Cow position: | chr24:17752443-17752244 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 130, 26 |
| Conread position: | 3-197 |
| Cow position: | chr24:18971025-18970828 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 140, 26 |
| Conread position: | 3-201 |
| Cow position: | chr24:7744065-7744269 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 90 |
| Conread position: | 3-201 |
| Cow position: | chr24:24137373-24137182 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 150, 26 |
| Conread position: | 3-201 |
| Cow position: | chr24:34761316-34761516 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-202 |
| Cow position: | chr24:31770287-31770490 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-207 |
| Cow position: | chr24:6141478-6141272 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 3-207 |
| Cow position: | chr24:17491382-17491588 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr24:17544154-17543938 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 3-217 |
| Cow position: | chr24:23616173-23616389 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 140, 26 |
| Conread position: | 3-217 |
| Cow position: | chr24:24250202-24250418 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 3-217 |
| Cow position: | chr24:27905907-27906122 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 144, 17 |
| Conread position: | 3-217 |
| Cow position: | chr24:29073199-29072983 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 3-217 |
| Cow position: | chr24:29191092-29191308 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr24:36555350-36555134 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr24:36780225-36780441 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 144, 23 |
| Conread position: | 3-217 |
| Cow position: | chr24:43507032-43506819 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 144, 23 |
| Conread position: | 3-221 |
| Cow position: | chr24:22193204-22193423 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 143, 27 |
| Conread position: | 3-224 |
| Cow position: | chr24:29064164-29063942 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 144, 24 |
| Conread position: | 3-271 |
| Cow position: | chr24:27290355-27290630 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 3-286 |
| Cow position: | chr24:11886642-11886929 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 4-141 |
| Cow position: | chr24:16557174-16557041 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 4-156 |
| Cow position: | chr24:28062427-28062578 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 4-173 |
| Cow position: | chr24:17364171-17363999 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 4-179 |
| Cow position: | chr24:31758490-31758314 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 143, 13 |
| Conread position: | 4-207 |
| Cow position: | chr24:11118766-11118973 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 140, 25 |
| Conread position: | 4-217 |
| Cow position: | chr24:4616267-4616052 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 5-145 |
| Cow position: | chr24:12146779-12146643 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 5-196 |
| Cow position: | chr24:20024092-20024281 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 149, 24 |
| Conread position: | 5-207 |
| Cow position: | chr24:29596326-29596127 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 142, 24 |
| Conread position: | 8-178 |
| Cow position: | chr24:34314609-34314783 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 139, 21 |
| Conread position: | 9-181 |
| Cow position: | chr24:36722214-36722391 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 9-248 |
| Cow position: | chr24:31811672-31811912 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 13-217 |
| Cow position: | chr24:39238286-39238492 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 134, 16 |
| Conread position: | 16-161 |
| Cow position: | chr24:20225377-20225231 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 129, 13 |
| Conread position: | 16-181 |
| Cow position: | chr24:27754183-27754356 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 17-181 |
| Cow position: | chr24:25991672-25991505 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 19-145 |
| Cow position: | chr24:38479451-38479330 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 19-182 |
| Cow position: | chr24:35571978-35572148 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 21-224 |
| Cow position: | chr24:18025468-18025264 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 126, 8 |
| Conread position: | 27-192 |
| Cow position: | chr24:18742069-18741897 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 120, 31 |
| Conread position: | 29-222 |
| Cow position: | chr24:11839682-11839879 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 118, 63 |
| Conread position: | 32-227 |
| Cow position: | chr24:8814504-8814307 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 115, 56 |
| Conread position: | 181-292 |
| Cow position: | chr24:30229210-30229321 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 108, 91 |
Show alignments to all cow chromosomes.