Cow genome map

Conread name: rpigca0_010438.y1

Conread position: 1-180
Cow position: chr28:34082509-34082326 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 145, 28

Conread position: 2-282
Cow position: chr28:23410721-23410457 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 198
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 160, 27

Conread position: 3-134
Cow position: chr28:19023570-19023442 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 3-143
Cow position: chr28:2862418-2862553 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 3-144
Cow position: chr28:22320801-22320941 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 40, 26

Conread position: 3-145
Cow position: chr28:9285856-9285716 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 3-145
Cow position: chr28:18590771-18590908 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 3-149
Cow position: chr28:33640332-33640476 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 142, 26

Conread position: 3-152
Cow position: chr28:4308367-4308219 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 124, 26

Conread position: 3-156
Cow position: chr28:4070473-4070627 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 144, 26

Conread position: 3-175
Cow position: chr28:5768711-5768887 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 144, 26

Conread position: 3-176
Cow position: chr28:25596172-25596347 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 144, 26

Conread position: 3-179
Cow position: chr28:25767737-25767917 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 107, 26

Conread position: 3-181
Cow position: chr28:11451966-11451785 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 142, 31

Conread position: 3-182
Cow position: chr28:7372743-7372560 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 140, 26

Conread position: 3-182
Cow position: chr28:7685167-7684985 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr28:13865309-13865496 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 106, 27

Conread position: 3-182
Cow position: chr28:34199943-34199755 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 107, 26

Conread position: 3-183
Cow position: chr28:1537192-1537373 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 140, 12

Conread position: 3-183
Cow position: chr28:21672322-21672505 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 144, 26

Conread position: 3-191
Cow position: chr28:6577162-6577360 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 112, 26

Conread position: 3-191
Cow position: chr28:11427027-11426836 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 144, 26

Conread position: 3-192
Cow position: chr28:7864838-7865032 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 140, 26

Conread position: 3-192
Cow position: chr28:8716988-8716794 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 142, 27

Conread position: 3-192
Cow position: chr28:10529956-10529764 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 143, 26

Conread position: 3-192
Cow position: chr28:21104336-21104143 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 144, 27

Conread position: 3-192
Cow position: chr28:24686129-24686323 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 107, 26

Conread position: 3-194
Cow position: chr28:10762193-10762377 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 74, 26

Conread position: 3-201
Cow position: chr28:10478819-10478617 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 58

Conread position: 3-201
Cow position: chr28:10900329-10900528 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 144, 26

Conread position: 3-201
Cow position: chr28:20124295-20124497 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 52, 26

Conread position: 3-201
Cow position: chr28:21598743-21598545 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 142, 26

Conread position: 3-207
Cow position: chr28:16387079-16387288 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 62, 26

Conread position: 3-207
Cow position: chr28:25056478-25056685 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 144, 26

Conread position: 3-207
Cow position: chr28:32717494-32717287 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 143, 26

Conread position: 3-216
Cow position: chr28:31842175-31841959 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 135, 26

Conread position: 3-217
Cow position: chr28:5805026-5805243 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 79, 26

Conread position: 3-217
Cow position: chr28:6047554-6047770 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 142, 26

Conread position: 3-217
Cow position: chr28:10578109-10577893 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 142, 26

Conread position: 3-217
Cow position: chr28:16211584-16211373 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr28:19300803-19301020 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 107, 26

Conread position: 3-217
Cow position: chr28:21354732-21354948 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr28:23254279-23254066 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 144, 27

Conread position: 3-217
Cow position: chr28:24603688-24603903 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 142, 26

Conread position: 3-217
Cow position: chr28:26727903-26727688 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 142, 26

Conread position: 3-217
Cow position: chr28:29035888-29035672 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 142, 26

Conread position: 3-223
Cow position: chr28:8022602-8022381 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 144, 26

Conread position: 3-224
Cow position: chr28:3144378-3144156 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 140, 26

Conread position: 3-227
Cow position: chr28:7882312-7882538 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 144, 26

Conread position: 3-236
Cow position: chr28:10172955-10172715 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 65, 26

Conread position: 3-245
Cow position: chr28:22132430-22132681 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 180
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 126, 26

Conread position: 3-248
Cow position: chr28:4535989-4536227 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 143, 26

Conread position: 3-263
Cow position: chr28:27428226-27428491 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 184
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 73, 27

Conread position: 4-131
Cow position: chr28:4586488-4586609 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 4-185
Cow position: chr28:15410364-15410550 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 11, 26

Conread position: 4-198
Cow position: chr28:8787070-8787256 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 136, 25

Conread position: 4-217
Cow position: chr28:746674-746894 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 26, 59

Conread position: 4-217
Cow position: chr28:21844466-21844680 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 142, 25

Conread position: 4-224
Cow position: chr28:16109462-16109684 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 143, 26

Conread position: 5-189
Cow position: chr28:18354795-18354608 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 5, 21

Conread position: 5-207
Cow position: chr28:10280593-10280797 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 138, 24

Conread position: 5-216
Cow position: chr28:28185309-28185525 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 142, 30

Conread position: 5-217
Cow position: chr28:3914220-3914434 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 141, 24

Conread position: 9-179
Cow position: chr28:7014196-7014022 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 138, 20

Conread position: 9-181
Cow position: chr28:25726893-25727071 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 70, 20

Conread position: 9-182
Cow position: chr28:19393387-19393565 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 129, 20

Conread position: 9-192
Cow position: chr28:7981189-7981002 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 138, 20

Conread position: 9-217
Cow position: chr28:1316276-1316066 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 137, 21

Conread position: 16-183
Cow position: chr28:21867972-21868143 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 131, 13

Conread position: 16-229
Cow position: chr28:18790536-18790744 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 132, 13

Conread position: 17-192
Cow position: chr28:330036-329856 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 128, 9

Conread position: 20-183
Cow position: chr28:16346990-16346824 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 127, 14

Conread position: 20-192
Cow position: chr28:21129598-21129422 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 125, 9

Conread position: 22-217
Cow position: chr28:8972501-8972696 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 124, 7

Conread position: 29-182
Cow position: chr28:11585674-11585516 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 117, 29

Conread position: 29-201
Cow position: chr28:11047109-11047284 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 118, 29

Conread position: 29-224
Cow position: chr28:22500946-22500755 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 118, 29

Conread position: 181-289
Cow position: chr28:11752373-11752266 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 104, 0

Conread position: 181-289
Cow position: chr28:15063568-15063460 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 105

Conread position: 181-290
Cow position: chr28:3751090-3751193 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 181-290
Cow position: chr28:11585436-11585329 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 75, 0

Conread position: 181-290
Cow position: chr28:22345791-22345895 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 181-292
Cow position: chr28:14742572-14742685 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 107

Conread position: 183-290
Cow position: chr28:16211323-16211216 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 65, 101

Conread position: 183-290
Cow position: chr28:31841566-31841459 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 91
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 184-293
Cow position: chr28:8629002-8628898 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 70, 0

Show alignments to all cow chromosomes.