Cow genome map
| Conread name: | rpigca0_010438.y1 |
| Conread position: | 1-142 |
| Cow position: | chr29:28696662-28696523 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 28 |
| Conread position: | 3-140 |
| Cow position: | chr29:40117056-40117189 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 3-141 |
| Cow position: | chr29:5977604-5977468 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 3-141 |
| Cow position: | chr29:6775484-6775349 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-141 |
| Cow position: | chr29:18212497-18212357 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 3-141 |
| Cow position: | chr29:23348720-23348589 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-143 |
| Cow position: | chr29:19124617-19124754 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-145 |
| Cow position: | chr29:1324940-1325078 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-145 |
| Cow position: | chr29:10236925-10236786 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-146 |
| Cow position: | chr29:4120354-4120494 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 3-159 |
| Cow position: | chr29:17153982-17154143 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 115, 26 |
| Conread position: | 3-181 |
| Cow position: | chr29:9137800-9137980 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-182 |
| Cow position: | chr29:686690-686507 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-182 |
| Cow position: | chr29:4875404-4875219 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-182 |
| Cow position: | chr29:6871540-6871357 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 3-182 |
| Cow position: | chr29:7664267-7664080 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 112, 26 |
| Conread position: | 3-182 |
| Cow position: | chr29:8681449-8681266 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 3-182 |
| Cow position: | chr29:18879167-18878984 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 3-182 |
| Cow position: | chr29:29770985-29770802 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 3-182 |
| Cow position: | chr29:36209429-36209612 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 145, 26 |
| Conread position: | 3-182 |
| Cow position: | chr29:40498146-40497963 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 3-191 |
| Cow position: | chr29:457545-457353 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-191 |
| Cow position: | chr29:8667314-8667506 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 140, 26 |
| Conread position: | 3-192 |
| Cow position: | chr29:2984357-2984549 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-192 |
| Cow position: | chr29:7956464-7956271 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-192 |
| Cow position: | chr29:16012239-16012048 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-201 |
| Cow position: | chr29:4001919-4002119 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-201 |
| Cow position: | chr29:16609242-16609441 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 112, 26 |
| Conread position: | 3-201 |
| Cow position: | chr29:40096466-40096666 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 3-201 |
| Cow position: | chr29:45006115-45005915 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-216 |
| Cow position: | chr29:18749081-18748865 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr29:9332646-9332861 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 140, 26 |
| Conread position: | 3-217 |
| Cow position: | chr29:10819981-10819765 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-217 |
| Cow position: | chr29:32290104-32290319 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 140, 26 |
| Conread position: | 3-217 |
| Cow position: | chr29:34551953-34552169 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 107, 26 |
| Conread position: | 3-217 |
| Cow position: | chr29:34774362-34774146 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 3-224 |
| Cow position: | chr29:12222173-12221954 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 142, 27 |
| Conread position: | 3-224 |
| Cow position: | chr29:16187189-16187407 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 144, 31 |
| Conread position: | 3-224 |
| Cow position: | chr29:21665476-21665699 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 143, 27 |
| Conread position: | 3-224 |
| Cow position: | chr29:26778391-26778615 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 3-227 |
| Cow position: | chr29:19761776-19762002 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 144, 27 |
| Conread position: | 3-291 |
| Cow position: | chr29:3549265-3549562 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 141, 26 |
| Conread position: | 4-217 |
| Cow position: | chr29:34746152-34745937 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 139, 25 |
| Conread position: | 5-182 |
| Cow position: | chr29:18364905-18364724 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 142, 24 |
| Conread position: | 5-182 |
| Cow position: | chr29:22935790-22935968 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 142, 24 |
| Conread position: | 5-199 |
| Cow position: | chr29:36428782-36428585 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 142, 24 |
| Conread position: | 5-217 |
| Cow position: | chr29:19338463-19338677 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 142, 24 |
| Conread position: | 8-152 |
| Cow position: | chr29:22162783-22162641 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 8-224 |
| Cow position: | chr29:41812067-41811850 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 139, 12 |
| Conread position: | 9-179 |
| Cow position: | chr29:32175997-32176166 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 145, 20 |
| Conread position: | 9-182 |
| Cow position: | chr29:40300460-40300283 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 139, 20 |
| Conread position: | 9-192 |
| Cow position: | chr29:18012106-18012293 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 137, 9 |
| Conread position: | 9-217 |
| Cow position: | chr29:3539750-3539537 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 11-222 |
| Cow position: | chr29:36530373-36530585 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 17-277 |
| Cow position: | chr29:5187268-5187002 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 130, 12 |
| Conread position: | 20-183 |
| Cow position: | chr29:31594552-31594384 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 22-194 |
| Cow position: | chr29:10819145-10818964 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 7 |
| Conread position: | 22-217 |
| Cow position: | chr29:35738984-35738787 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 125, 7 |
| Conread position: | 22-248 |
| Cow position: | chr29:9638792-9638562 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 125, 7 |
| Conread position: | 28-277 |
| Cow position: | chr29:11562229-11562475 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 29-145 |
| Cow position: | chr29:43321099-43321213 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 30-183 |
| Cow position: | chr29:5062684-5062842 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 112, 28 |
| Conread position: | 177-290 |
| Cow position: | chr29:4875142-4875024 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 60, 114 |
| Conread position: | 182-289 |
| Cow position: | chr29:19762038-19762144 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 103, 0 |
Show alignments to all cow chromosomes.