Cow genome map

Conread name: rpigca0_010438.y1

Conread position: 3-137
Cow position: chr9:16086662-16086793 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 3-141
Cow position: chr9:24887786-24887651 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 3-141
Cow position: chr9:25764654-25764520 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 3-145
Cow position: chr9:9086850-9086711 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 26

Conread position: 3-145
Cow position: chr9:15805398-15805537 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 3-145
Cow position: chr9:56293875-56293735 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 3-145
Cow position: chr9:63555891-63555751 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 3-146
Cow position: chr9:21840662-21840522 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 3-146
Cow position: chr9:44920886-44921025 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 3-161
Cow position: chr9:6089630-6089470 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 108, 26

Conread position: 3-181
Cow position: chr9:5327746-5327565 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 142, 6

Conread position: 3-182
Cow position: chr9:1520202-1520385 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr9:1983979-1984162 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr9:5886778-5886593 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 63, 26

Conread position: 3-182
Cow position: chr9:7410306-7410126 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr9:9723357-9723539 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 131, 26

Conread position: 3-182
Cow position: chr9:11312988-11313170 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr9:13493660-13493843 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 143, 26

Conread position: 3-182
Cow position: chr9:21462312-21462496 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 111, 26

Conread position: 3-182
Cow position: chr9:33100627-33100811 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 143, 26

Conread position: 3-182
Cow position: chr9:39681885-39681702 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 140, 27

Conread position: 3-182
Cow position: chr9:41319142-41319325 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 142, 26

Conread position: 3-182
Cow position: chr9:48017297-48017479 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr9:49544532-49544719 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 113, 26

Conread position: 3-182
Cow position: chr9:51011129-51011311 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 143, 24

Conread position: 3-182
Cow position: chr9:55534082-55534266 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 3-182
Cow position: chr9:55983200-55983387 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 56, 27

Conread position: 3-183
Cow position: chr9:4304877-4304708 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 3-183
Cow position: chr9:13186200-13186385 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 140, 26

Conread position: 3-183
Cow position: chr9:17740421-17740602 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 144, 31

Conread position: 3-183
Cow position: chr9:21459635-21459812 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 147, 26

Conread position: 3-183
Cow position: chr9:28948386-28948196 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 112, 26

Conread position: 3-183
Cow position: chr9:44500317-44500500 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 144, 26

Conread position: 3-184
Cow position: chr9:29184611-29184795 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 144, 26

Conread position: 3-192
Cow position: chr9:7634790-7634598 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 3-192
Cow position: chr9:20091803-20091612 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 27

Conread position: 3-192
Cow position: chr9:28746999-28747191 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 144, 26

Conread position: 3-192
Cow position: chr9:45285017-45285211 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 144, 26

Conread position: 3-196
Cow position: chr9:35904227-35904420 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 140, 26

Conread position: 3-201
Cow position: chr9:8338577-8338377 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 140, 26

Conread position: 3-201
Cow position: chr9:26115325-26115523 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 143, 26

Conread position: 3-201
Cow position: chr9:29007094-29006894 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 144, 26

Conread position: 3-201
Cow position: chr9:34689062-34689259 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 144, 26

Conread position: 3-201
Cow position: chr9:46316262-46316461 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 142, 26

Conread position: 3-201
Cow position: chr9:52407689-52407493 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 151, 26

Conread position: 3-201
Cow position: chr9:58674282-58674084 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 144, 27

Conread position: 3-202
Cow position: chr9:2978038-2977837 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 143, 26

Conread position: 3-207
Cow position: chr9:17871278-17871482 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 144, 24

Conread position: 3-207
Cow position: chr9:29361912-29362118 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 10, 27

Conread position: 3-207
Cow position: chr9:35129351-35129145 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 3-207
Cow position: chr9:44553305-44553091 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 37, 26

Conread position: 3-217
Cow position: chr9:8908952-8908735 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 142, 26

Conread position: 3-217
Cow position: chr9:13471971-13471760 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 142, 26

Conread position: 3-217
Cow position: chr9:17410662-17410878 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr9:22443088-22443304 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 98, 17

Conread position: 3-217
Cow position: chr9:26518307-26518523 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr9:27085996-27085774 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 112, 27

Conread position: 3-217
Cow position: chr9:34696769-34696985 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr9:37017411-37017195 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr9:37510539-37510328 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 151, 26

Conread position: 3-217
Cow position: chr9:49292563-49292779 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 144, 26

Conread position: 3-217
Cow position: chr9:62817600-62817383 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 107, 26

Conread position: 3-220
Cow position: chr9:20900588-20900807 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 144, 26

Conread position: 3-220
Cow position: chr9:30736884-30736664 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 144, 26

Conread position: 3-222
Cow position: chr9:29338509-29338729 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 106, 26

Conread position: 3-224
Cow position: chr9:4630995-4630787 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 3-224
Cow position: chr9:9260654-9260430 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 144, 26

Conread position: 3-224
Cow position: chr9:16218121-16218342 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 136, 26

Conread position: 3-224
Cow position: chr9:22803041-22802818 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 144, 26

Conread position: 3-224
Cow position: chr9:24996972-24997200 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 115, 26

Conread position: 3-225
Cow position: chr9:32812861-32812649 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 3-229
Cow position: chr9:22361540-22361314 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 144, 26

Conread position: 3-248
Cow position: chr9:38634399-38634647 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 142, 26

Conread position: 3-248
Cow position: chr9:39971560-39971311 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 143, 26

Conread position: 4-194
Cow position: chr9:19743505-19743309 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 100, 25

Conread position: 4-199
Cow position: chr9:53110045-53109850 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 141, 16

Conread position: 4-217
Cow position: chr9:4929146-4928936 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 141, 25

Conread position: 5-145
Cow position: chr9:22151579-22151716 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 116, 21

Conread position: 5-202
Cow position: chr9:28773643-28773443 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 142, 25

Conread position: 5-217
Cow position: chr9:53607869-53608083 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 142, 24

Conread position: 11-201
Cow position: chr9:37193180-37192987 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 99, 17

Conread position: 11-224
Cow position: chr9:23388160-23388375 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 134, 18

Conread position: 16-182
Cow position: chr9:22828586-22828416 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 129, 13

Conread position: 16-183
Cow position: chr9:35375936-35375764 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 131, 19

Conread position: 16-192
Cow position: chr9:52689128-52689308 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 131, 13

Conread position: 17-217
Cow position: chr9:21963096-21963298 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 128, 12

Conread position: 17-225
Cow position: chr9:5246359-5246148 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 102, 12

Conread position: 20-217
Cow position: chr9:8525574-8525376 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 125, 5

Conread position: 29-146
Cow position: chr9:10143932-10144047 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 29-187
Cow position: chr9:17634128-17634291 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 118, 23

Conread position: 29-217
Cow position: chr9:56031833-56032018 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 121, 13

Conread position: 34-183
Cow position: chr9:20942116-20942270 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 113, 24

Conread position: 34-224
Cow position: chr9:34901111-34901304 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 112, 24

Conread position: 35-146
Cow position: chr9:41789793-41789683 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 38-179
Cow position: chr9:38344672-38344526 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 109, 20

Conread position: 51-182
Cow position: chr9:4126526-4126388 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 62, 41

Conread position: 173-290
Cow position: chr9:10144201-10144317 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 112, 0

Conread position: 181-277
Cow position: chr9:28747259-28747354 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 181-289
Cow position: chr9:54666168-54666063 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 181-290
Cow position: chr9:34697032-34697138 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 73, 0

Show alignments to all cow chromosomes.