Cow genome map

Conread name: rpigcb_10277.y1

Conread position: 6-381
Cow position: chr19:14940379-14940754 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 160

Conread position: 6-383
Cow position: chr19:14940547-14940924 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-383
Cow position: chr19:14940631-14941008 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 161

Conread position: 8-381
Cow position: chr19:23596837-23597207 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 229
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 208, 195

Conread position: 8-381
Cow position: chr19:23613658-23614030 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 7

Conread position: 8-381
Cow position: chr19:23614666-23615038 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 8-383
Cow position: chr19:43570167-43569792 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 239
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 8-386
Cow position: chr19:23596922-23597296 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 9

Conread position: 8-386
Cow position: chr19:23649864-23650241 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 9

Conread position: 9-313
Cow position: chr19:14959595-14959292 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 287, 0

Conread position: 11-296
Cow position: chr19:14959104-14958819 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 186
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 11-326
Cow position: chr19:14948323-14948008 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 208
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 11-371
Cow position: chr19:14940048-14940408 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-380
Cow position: chr19:14959675-14959308 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 246
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 242, 24

Conread position: 11-381
Cow position: chr19:14940216-14940586 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-381
Cow position: chr19:23649950-23650320 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 243
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 320, 329

Conread position: 12-297
Cow position: chr19:23597426-23597711 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 197
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 86, 71

Conread position: 12-380
Cow position: chr19:14960080-14959714 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 232
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 81, 68

Conread position: 12-384
Cow position: chr19:23649783-23650155 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 160

Conread position: 13-369
Cow position: chr19:43569994-43569642 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 233
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 168, 174

Conread position: 13-381
Cow position: chr19:23650036-23650404 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-379
Cow position: chr19:23650121-23650486 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 236
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 14-381
Cow position: chr19:23613495-23613862 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 256

Conread position: 14-381
Cow position: chr19:43570245-43569879 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 66

Conread position: 14-384
Cow position: chr19:43570077-43569709 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 344, 0

Conread position: 14-386
Cow position: chr19:23597176-23597548 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 248
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 80, 65

Conread position: 14-386
Cow position: chr19:23613411-23613783 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 244

Conread position: 15-383
Cow position: chr19:20677511-20677879 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 236
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 16-228
Cow position: chr19:20635232-20635020 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 16-377
Cow position: chr19:23614589-23614950 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 70

Conread position: 16-381
Cow position: chr19:14940137-14940502 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 320

Conread position: 16-381
Cow position: chr19:23614001-23614366 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 170

Conread position: 16-384
Cow position: chr19:23613581-23613949 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 163

Conread position: 17-231
Cow position: chr19:14940810-14941024 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 17-328
Cow position: chr19:14916029-14916336 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 198
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 53, 67

Conread position: 17-366
Cow position: chr19:23614758-23615107 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 234
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 133, 155

Conread position: 17-372
Cow position: chr19:14959176-14958827 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 239
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 239, 66

Conread position: 17-378
Cow position: chr19:20635399-20635038 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-378
Cow position: chr19:23649536-23649897 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 239
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 84, 75

Conread position: 17-378
Cow position: chr19:23649620-23649981 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 63

Conread position: 17-381
Cow position: chr19:14960409-14960047 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 241
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 258, 0

Conread position: 17-381
Cow position: chr19:20677597-20677961 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 155

Conread position: 17-381
Cow position: chr19:23597095-23597459 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 155

Conread position: 17-381
Cow position: chr19:23597347-23597711 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 230
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 17-381
Cow position: chr19:23613750-23614114 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 167

Conread position: 17-381
Cow position: chr19:23614170-23614534 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 240
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 164, 169

Conread position: 17-381
Cow position: chr19:23614254-23614618 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-381
Cow position: chr19:23614422-23614786 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 241
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 329, 316

Conread position: 17-381
Cow position: chr19:23649452-23649816 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 244
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 84, 75

Conread position: 17-381
Cow position: chr19:23649704-23650068 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 244
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 132, 139

Conread position: 17-382
Cow position: chr19:14940474-14940839 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 165

Conread position: 17-383
Cow position: chr19:14948401-14948035 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 241
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 289, 284

Conread position: 17-383
Cow position: chr19:20635483-20635117 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 172

Conread position: 17-383
Cow position: chr19:23613834-23614200 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-383
Cow position: chr19:23613918-23614284 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 319

Conread position: 17-384
Cow position: chr19:23614338-23614705 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 223

Conread position: 17-386
Cow position: chr19:14948484-14948116 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 241
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 84, 0

Conread position: 17-386
Cow position: chr19:14960241-14959874 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 63

Conread position: 17-386
Cow position: chr19:23597263-23597632 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 323

Conread position: 17-386
Cow position: chr19:23614086-23614455 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 152

Conread position: 17-386
Cow position: chr19:23614506-23614875 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 168

Conread position: 20-384
Cow position: chr19:14959257-14958898 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 235
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 361, 138

Conread position: 21-330
Cow position: chr19:14940730-14941039 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 205
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 22-381
Cow position: chr19:14960154-14959797 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 214

Conread position: 22-381
Cow position: chr19:20678442-20678798 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 232
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 164, 151

Conread position: 22-383
Cow position: chr19:20678022-20678383 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 246
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 55, 78

Conread position: 23-301
Cow position: chr19:20678527-20678802 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 185
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 163, 150

Conread position: 23-381
Cow position: chr19:20677687-20678045 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 243

Conread position: 25-379
Cow position: chr19:20635560-20635205 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 29-328
Cow position: chr19:20678365-20678664 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 50

Conread position: 29-381
Cow position: chr19:20677441-20677793 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 232
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 134, 157

Conread position: 29-383
Cow position: chr19:20635639-20635285 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 236
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 217, 211

Conread position: 29-383
Cow position: chr19:20677945-20678299 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 237
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 72, 55

Conread position: 29-384
Cow position: chr19:20678197-20678552 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 143

Conread position: 30-386
Cow position: chr19:23649297-23649653 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 237
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 52, 70

Conread position: 35-381
Cow position: chr19:14939988-14940334 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 199

Conread position: 35-381
Cow position: chr19:20678287-20678633 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 237
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 147, 128

Conread position: 38-381
Cow position: chr19:20678122-20678465 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 134

Conread position: 38-381
Cow position: chr19:23613351-23613694 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 225
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 208, 196

Conread position: 38-386
Cow position: chr19:23649389-23649737 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 227
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 42, 53

Conread position: 41-330
Cow position: chr19:14915967-14916256 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 192
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 37, 161

Conread position: 52-384
Cow position: chr19:43570287-43569960 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 227
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 34, 10

Conread position: 53-381
Cow position: chr19:20635699-20635371 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 211
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 26, 40

Conread position: 55-381
Cow position: chr19:14959306-14958986 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 204
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 185, 0

Conread position: 59-383
Cow position: chr19:14959711-14959389 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 213
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 200, 60

Conread position: 84-386
Cow position: chr19:23649269-23649569 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 189
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 98, 15

Conread position: 146-382
Cow position: chr19:14960448-14960212 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 108, 94

Show alignments to all cow chromosomes.