Cow genome map
| Conread name: | rpigcb_10277.y1 |
| Conread position: | 5-329 |
| Cow position: | chr23:25626666-25626991 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 5, 76 |
| Conread position: | 5-386 |
| Cow position: | chr23:24626360-24626741 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 327 |
| Conread position: | 8-243 |
| Cow position: | chr23:24522428-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 8-330 |
| Cow position: | chr23:25698432-25698111 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 87, 9 |
| Conread position: | 8-377 |
| Cow position: | chr23:24639524-24639892 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 9 |
| Conread position: | 8-381 |
| Cow position: | chr23:24639608-24639980 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 9 |
| Conread position: | 8-386 |
| Cow position: | chr23:25626254-25626628 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 9 |
| Conread position: | 11-199 |
| Cow position: | chr23:25723901-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-370 |
| Cow position: | chr23:24547020-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 69 |
| Conread position: | 11-381 |
| Cow position: | chr23:24560580-24560210 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-381 |
| Cow position: | chr23:24560664-24560294 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-381 |
| Cow position: | chr23:24639694-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 69 |
| Conread position: | 11-381 |
| Cow position: | chr23:25660209-25660579 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 171 |
| Conread position: | 12-307 |
| Cow position: | chr23:24639779-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 247, 228 |
| Conread position: | 14-287 |
| Cow position: | chr23:25660464-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 135, 161 |
| Conread position: | 14-381 |
| Cow position: | chr23:24639445-24639812 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 226 |
| Conread position: | 14-382 |
| Cow position: | chr23:25626592-25626961 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 14-384 |
| Cow position: | chr23:24522756-24522389 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 79, 66 |
| Conread position: | 15-330 |
| Cow position: | chr23:24522506-24522191 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 232 |
| Conread position: | 15-367 |
| Cow position: | chr23:25724065-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 65 |
| Conread position: | 16-381 |
| Cow position: | chr23:24547183-24546818 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 64 |
| Conread position: | 17-230 |
| Cow position: | chr23:24639868-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-294 |
| Cow position: | chr23:25626763-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 82, 66 |
| Conread position: | 17-327 |
| Cow position: | chr23:24535729-24535418 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 81, 63 |
| Conread position: | 17-330 |
| Cow position: | chr23:25698676-25698363 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 84, 79 |
| Conread position: | 17-378 |
| Cow position: | chr23:24535813-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 260, 224 |
| Conread position: | 17-378 |
| Cow position: | chr23:24654181-24654535 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 17-381 |
| Cow position: | chr23:24547098-24546734 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 17-381 |
| Cow position: | chr23:24547266-24546902 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 62 |
| Conread position: | 17-381 |
| Cow position: | chr23:24639280-24639644 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 151 |
| Conread position: | 17-381 |
| Cow position: | chr23:24639364-24639728 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 17-381 |
| Cow position: | chr23:25626094-25626458 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-381 |
| Cow position: | chr23:25660299-25660663 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 63 |
| Conread position: | 17-382 |
| Cow position: | chr23:24560490-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 223 |
| Conread position: | 17-383 |
| Cow position: | chr23:24522669-24522306 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 97, 59 |
| Conread position: | 17-383 |
| Cow position: | chr23:25626010-25626376 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-386 |
| Cow position: | chr23:24560742-24560373 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 223 |
| Conread position: | 17-386 |
| Cow position: | chr23:25698508-25698139 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 185, 205 |
| Conread position: | 22-381 |
| Cow position: | chr23:24560821-24560462 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 218 |
| Conread position: | 22-386 |
| Cow position: | chr23:24535976-24535612 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 315, 309 |
| Conread position: | 23-380 |
| Cow position: | chr23:25660389-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 318 |
| Conread position: | 24-383 |
| Cow position: | chr23:24522828-24522474 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 26-328 |
| Cow position: | chr23:25626187-25626489 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 28-386 |
| Cow position: | chr23:24536054-24535696 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-381 |
| Cow position: | chr23:24522576-24522224 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 211 |
| Conread position: | 31-383 |
| Cow position: | chr23:25660145-25660497 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 209 |
| Conread position: | 33-367 |
| Cow position: | chr23:24521982-24521653 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 211, 254 |
| Conread position: | 33-383 |
| Cow position: | chr23:24547334-24546984 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 38-381 |
| Cow position: | chr23:24560889-24560546 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 33, 46 |
| Conread position: | 41-381 |
| Cow position: | chr23:24535873-24535533 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 46-380 |
| Cow position: | chr23:24654042-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-383 |
| Cow position: | chr23:25724105-25723781 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 107-379 |
| Cow position: | chr23:24522063-24521804 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 54, 70 |
| Conread position: | 115-381 |
| Cow position: | chr23:24626302-24626568 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 122-385 |
| Cow position: | chr23:24639217-24639480 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 129, 118 |
| Conread position: | 131-381 |
| Cow position: | chr23:24654043-24654293 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 128, 110 |
| Conread position: | 132-381 |
| Cow position: | chr23:25698645-25698396 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 50 |
| Conread position: | 137-381 |
| Cow position: | chr23:25724111-25723867 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 133, 110 |
| Conread position: | 145-384 |
| Cow position: | chr23:24626251-24626487 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 44, 19 |
Show alignments to all cow chromosomes.