Cow genome map

Conread name: rpigcb_10277.y1

Conread position: 4-386
Cow position: chr25:33305436-33305059 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 253
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 12, 33

Conread position: 5-212
Cow position: chr25:327058-327265 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 148, 162

Conread position: 5-380
Cow position: chr25:33298614-33298989 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 241
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 8-328
Cow position: chr25:34714173-34714491 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 207
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 96, 9

Conread position: 8-381
Cow position: chr25:33298954-33299326 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 257
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 63, 7

Conread position: 8-381
Cow position: chr25:34446908-34447281 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 25

Conread position: 8-381
Cow position: chr25:34770070-34769697 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-383
Cow position: chr25:34433494-34433866 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 230
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 288, 113

Conread position: 9-350
Cow position: chr25:33305180-33304844 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 226
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 136, 85

Conread position: 10-381
Cow position: chr25:34770152-34769781 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 28

Conread position: 11-200
Cow position: chr25:34714343-34714532 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 134
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 163, 152

Conread position: 11-291
Cow position: chr25:33127943-33128223 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 192
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 82, 69

Conread position: 11-322
Cow position: chr25:33157080-33156770 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 0

Conread position: 11-328
Cow position: chr25:34732551-34732234 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 203
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 11-329
Cow position: chr25:34433581-34433896 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 198
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 11-333
Cow position: chr25:34769563-34769241 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 84, 69

Conread position: 11-374
Cow position: chr25:34447583-34447935 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 224
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 255, 123

Conread position: 11-379
Cow position: chr25:23420440-23420808 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-381
Cow position: chr25:33157332-33156962 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 74

Conread position: 11-381
Cow position: chr25:33157416-33157046 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-381
Cow position: chr25:33298788-33299158 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 242
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 168, 173

Conread position: 11-381
Cow position: chr25:34446995-34447365 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 239
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 11-381
Cow position: chr25:34769983-34769613 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 229

Conread position: 11-383
Cow position: chr25:34447163-34447535 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 229

Conread position: 11-386
Cow position: chr25:25652497-25652872 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 222
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 362, 358

Conread position: 11-386
Cow position: chr25:34769815-34769440 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 229

Conread position: 11-386
Cow position: chr25:34769899-34769524 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-368
Cow position: chr25:36801601-36801957 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 232
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 70, 57

Conread position: 12-376
Cow position: chr25:33127860-33128224 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 221

Conread position: 12-382
Cow position: chr25:34447500-34447861 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 240
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 281, 203

Conread position: 12-386
Cow position: chr25:34447248-34447622 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-294
Cow position: chr25:326981-327263 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 184
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 5, 76

Conread position: 14-362
Cow position: chr25:23420527-23420875 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 228
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 14-380
Cow position: chr25:34769644-34769278 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 66

Conread position: 14-381
Cow position: chr25:25652332-25652699 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 223
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 231, 238

Conread position: 14-381
Cow position: chr25:33298875-33299242 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 236
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 14-381
Cow position: chr25:36800859-36801226 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 235
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 230, 235

Conread position: 14-383
Cow position: chr25:23420359-23420728 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-383
Cow position: chr25:34447082-34447451 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 234
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 14-384
Cow position: chr25:33157161-33156791 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 229

Conread position: 15-376
Cow position: chr25:33145075-33145436 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 238
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 84, 75

Conread position: 16-381
Cow position: chr25:33299129-33299494 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 242
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 53, 67

Conread position: 16-381
Cow position: chr25:34713844-34714209 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 225
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 177, 166

Conread position: 16-381
Cow position: chr25:36800525-36800890 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 224
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 85, 69

Conread position: 16-381
Cow position: chr25:36800777-36801142 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 241
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 14, 10

Conread position: 16-383
Cow position: chr25:326391-326758 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 236
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 40, 21

Conread position: 17-244
Cow position: chr25:427308-427535 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 152
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 133, 155

Conread position: 17-321
Cow position: chr25:36801030-36801334 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 203
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 55, 71

Conread position: 17-324
Cow position: chr25:326560-326867 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 198
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 54, 62

Conread position: 17-330
Cow position: chr25:18642192-18641876 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 206
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 123, 0

Conread position: 17-332
Cow position: chr25:22235976-22236291 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 196
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 62

Conread position: 17-367
Cow position: chr25:346511-346861 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 221
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 125, 130

Conread position: 17-368
Cow position: chr25:33299466-33299817 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 236
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 84, 70

Conread position: 17-381
Cow position: chr25:33127781-33128145 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-381
Cow position: chr25:33157242-33156878 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-381
Cow position: chr25:33157494-33157130 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 65

Conread position: 17-381
Cow position: chr25:33305339-33304979 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 21

Conread position: 17-381
Cow position: chr25:33306068-33305711 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 226
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 97, 123

Conread position: 17-381
Cow position: chr25:33306235-33305873 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 235
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 147, 47

Conread position: 17-381
Cow position: chr25:34447337-34447701 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 240
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 312, 318

Conread position: 17-381
Cow position: chr25:34763141-34763502 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 220
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 71

Conread position: 17-381
Cow position: chr25:34769725-34769361 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 63

Conread position: 17-381
Cow position: chr25:36800946-36801310 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 233
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 17-381
Cow position: chr25:36801522-36801886 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 240
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 312, 318

Conread position: 17-383
Cow position: chr25:33305256-33304894 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 246
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 85, 69

Conread position: 17-384
Cow position: chr25:33299298-33299665 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 252
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 54, 67

Conread position: 17-384
Cow position: chr25:34447421-34447782 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 282

Conread position: 17-386
Cow position: chr25:33305819-33305453 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 235
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 228, 78

Conread position: 17-386
Cow position: chr25:34714097-34714466 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 238
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 270, 277

Conread position: 17-386
Cow position: chr25:36800694-36801063 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 247
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 85, 73

Conread position: 20-327
Cow position: chr25:33306396-33306098 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 208
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 82, 62

Conread position: 20-379
Cow position: chr25:36800613-36800970 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 229
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 10, 6

Conread position: 25-386
Cow position: chr25:22235816-22236177 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 229
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 8

Conread position: 31-378
Cow position: chr25:34732615-34732268 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 225
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 40, 53

Conread position: 33-386
Cow position: chr25:346443-346796 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 219
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 191, 197

Conread position: 34-381
Cow position: chr25:36801371-36801718 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 228
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 60, 40

Conread position: 35-322
Cow position: chr25:326494-326781 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 181
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 35-381
Cow position: chr25:33144846-33145189 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 230
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 171, 166

Conread position: 38-362
Cow position: chr25:366725-367049 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 203
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 186, 192

Conread position: 38-381
Cow position: chr25:36800463-36800806 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 213
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 138, 148

Conread position: 40-381
Cow position: chr25:33298565-33298906 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 231
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 217, 205

Conread position: 44-381
Cow position: chr25:33145023-33145357 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 15

Conread position: 59-383
Cow position: chr25:23420320-23420644 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 218
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 203, 181

Conread position: 99-381
Cow position: chr25:18642194-18641909 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 186
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 125, 175

Conread position: 112-381
Cow position: chr25:33298469-33298738 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 184
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 60, 55

Conread position: 115-386
Cow position: chr25:34732615-34732344 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 182
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 144, 134

Conread position: 122-384
Cow position: chr25:366725-366987 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 174
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 160, 125

Conread position: 123-386
Cow position: chr25:33306461-33306202 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 172
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 158, 118

Conread position: 136-381
Cow position: chr25:33127732-33127977 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 27, 31

Conread position: 139-381
Cow position: chr25:23420316-23420558 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 193, 198

Conread position: 157-383
Cow position: chr25:33157522-33157296 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 155
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 51, 37

Conread position: 185-383
Cow position: chr25:326986-327184 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 133, 150

Conread position: 220-382
Cow position: chr25:33127732-33127894 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.