Cow genome map
| Conread name: | rpigcb_10277.y1 |
| Conread position: | 4-381 |
| Cow position: | chr7:42878721-42878345 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 13 |
| Conread position: | 7-328 |
| Cow position: | chr7:1439945-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 174, 10 |
| Conread position: | 8-172 |
| Cow position: | chr7:1440113-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 8-380 |
| Cow position: | chr7:3180424-3180795 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 9 |
| Conread position: | 8-383 |
| Cow position: | chr7:18389964-18390339 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 156, 183 |
| Conread position: | 8-384 |
| Cow position: | chr7:1014910-1015285 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 8-386 |
| Cow position: | chr7:3180004-3180381 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 9-384 |
| Cow position: | chr7:3179836-3180211 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 322 |
| Conread position: | 11-259 |
| Cow position: | chr7:1438474-1438722 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 168, 175 |
| Conread position: | 11-341 |
| Cow position: | chr7:18390471-18390802 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 84, 68 |
| Conread position: | 11-381 |
| Cow position: | chr7:1014828-1015198 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 229 |
| Conread position: | 11-381 |
| Cow position: | chr7:3180090-3180460 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 236 |
| Conread position: | 11-381 |
| Cow position: | chr7:3180342-3180712 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 174 |
| Conread position: | 11-386 |
| Cow position: | chr7:1015080-1015455 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-379 |
| Cow position: | chr7:18390389-18390755 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 221 |
| Conread position: | 14-252 |
| Cow position: | chr7:11600707-11600469 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-383 |
| Cow position: | chr7:11601127-11600758 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 220 |
| Conread position: | 15-330 |
| Cow position: | chr7:18390223-18390538 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 230 |
| Conread position: | 16-366 |
| Cow position: | chr7:11600789-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-381 |
| Cow position: | chr7:11600957-11600592 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-381 |
| Cow position: | chr7:18390308-18390673 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-383 |
| Cow position: | chr7:1439532-1439900 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 145, 71 |
| Conread position: | 17-289 |
| Cow position: | chr7:8325888-8326163 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 77, 62 |
| Conread position: | 17-327 |
| Cow position: | chr7:8242862-8243172 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 165, 146 |
| Conread position: | 17-327 |
| Cow position: | chr7:8242946-8243256 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 165, 181 |
| Conread position: | 17-327 |
| Cow position: | chr7:8243701-8244009 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 165, 147 |
| Conread position: | 17-327 |
| Cow position: | chr7:8325804-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 146 |
| Conread position: | 17-330 |
| Cow position: | chr7:8243449-8243762 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 159, 147 |
| Conread position: | 17-334 |
| Cow position: | chr7:11434585-11434274 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 92, 46 |
| Conread position: | 17-366 |
| Cow position: | chr7:42878625-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 226, 219 |
| Conread position: | 17-381 |
| Cow position: | chr7:1014750-1015114 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 169 |
| Conread position: | 17-381 |
| Cow position: | chr7:1015002-1015366 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 244, 224 |
| Conread position: | 17-381 |
| Cow position: | chr7:1438312-1438676 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 135, 154 |
| Conread position: | 17-381 |
| Cow position: | chr7:1439787-1440149 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 17-381 |
| Cow position: | chr7:3179760-3180124 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 316 |
| Conread position: | 17-381 |
| Cow position: | chr7:3180264-3180628 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 17-381 |
| Cow position: | chr7:8277323-8277687 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 157, 145 |
| Conread position: | 17-381 |
| Cow position: | chr7:8277575-8277939 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 84, 70 |
| Conread position: | 17-381 |
| Cow position: | chr7:8277659-8278023 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 169 |
| Conread position: | 17-381 |
| Cow position: | chr7:8325636-8326000 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 84, 68 |
| Conread position: | 17-381 |
| Cow position: | chr7:11601040-11600676 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-381 |
| Cow position: | chr7:42878793-42878429 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 308 |
| Conread position: | 17-381 |
| Cow position: | chr7:42878961-42878597 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-381 |
| Cow position: | chr7:42879213-42878849 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-382 |
| Cow position: | chr7:8243366-8243730 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 17-383 |
| Cow position: | chr7:1439870-1440235 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 131, 101 |
| Conread position: | 17-383 |
| Cow position: | chr7:3179928-3180294 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-383 |
| Cow position: | chr7:3180180-3180546 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 223 |
| Conread position: | 17-383 |
| Cow position: | chr7:8243617-8243983 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 174, 146 |
| Conread position: | 17-383 |
| Cow position: | chr7:8277407-8277773 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 252, 235 |
| Conread position: | 17-383 |
| Cow position: | chr7:8325048-8325414 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 253, 240 |
| Conread position: | 17-383 |
| Cow position: | chr7:8325384-8325750 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 165, 146 |
| Conread position: | 17-383 |
| Cow position: | chr7:42879045-42878679 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 76 |
| Conread position: | 17-384 |
| Cow position: | chr7:42878877-42878510 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 323 |
| Conread position: | 17-386 |
| Cow position: | chr7:8277911-8278280 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 161, 153 |
| Conread position: | 17-386 |
| Cow position: | chr7:42879129-42878760 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 223 |
| Conread position: | 18-383 |
| Cow position: | chr7:42879296-42878931 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 327 |
| Conread position: | 19-379 |
| Cow position: | chr7:1439451-1439813 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 160, 136 |
| Conread position: | 19-381 |
| Cow position: | chr7:1014668-1015030 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 251 |
| Conread position: | 21-381 |
| Cow position: | chr7:11600868-11600508 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 309, 319 |
| Conread position: | 22-380 |
| Cow position: | chr7:8325725-8326083 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 72 |
| Conread position: | 23-381 |
| Cow position: | chr7:18390147-18390505 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 56, 84 |
| Conread position: | 23-383 |
| Cow position: | chr7:8243204-8243563 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 162, 140 |
| Conread position: | 24-379 |
| Cow position: | chr7:8278086-8278441 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 154, 139 |
| Conread position: | 25-381 |
| Cow position: | chr7:8325307-8325664 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 5, 69 |
| Conread position: | 26-386 |
| Cow position: | chr7:1014513-1014867 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 29-325 |
| Cow position: | chr7:8243545-8243841 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-383 |
| Cow position: | chr7:8324892-8325246 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 79, 58 |
| Conread position: | 31-345 |
| Cow position: | chr7:1438410-1438723 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 32-332 |
| Cow position: | chr7:1014267-1014567 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-378 |
| Cow position: | chr7:11601190-11600847 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-383 |
| Cow position: | chr7:8324817-8325162 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 147, 133 |
| Conread position: | 40-330 |
| Cow position: | chr7:8324735-8325025 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 41-383 |
| Cow position: | chr7:42879442-42879099 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 59 |
| Conread position: | 53-383 |
| Cow position: | chr7:8277527-8277857 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 99, 133 |
| Conread position: | 99-381 |
| Cow position: | chr7:3179758-3180040 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 99-381 |
| Cow position: | chr7:11601210-11600928 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 101-327 |
| Cow position: | chr7:8277237-8277465 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 70 |
| Conread position: | 101-386 |
| Cow position: | chr7:1014252-1014537 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 160, 148 |
| Conread position: | 124-383 |
| Cow position: | chr7:8324735-8324994 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 39 |
Show alignments to all cow chromosomes.