Cow genome map
| Conread name: | rpigcb_10277.y1 |
| Conread position: | 3-381 |
| Cow position: | chrX:14181424-14181047 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 5-327 |
| Cow position: | chrX:13826561-13826239 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 292, 281 |
| Conread position: | 9-383 |
| Cow position: | chrX:25310197-25310571 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 225 |
| Conread position: | 10-380 |
| Cow position: | chrX:25325194-25324825 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 169, 7 |
| Conread position: | 12-386 |
| Cow position: | chrX:13826890-13826516 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 74, 88 |
| Conread position: | 13-383 |
| Cow position: | chrX:25325780-25325410 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 161, 175 |
| Conread position: | 14-381 |
| Cow position: | chrX:25310118-25310485 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 246 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 69, 64 |
| Conread position: | 15-380 |
| Cow position: | chrX:25325694-25325329 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-380 |
| Cow position: | chrX:25324601-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 16-381 |
| Cow position: | chrX:25325105-25324740 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 245, 217 |
| Conread position: | 16-381 |
| Cow position: | chrX:25325273-25324908 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 77 |
| Conread position: | 17-308 |
| Cow position: | chrX:29044945-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-315 |
| Cow position: | chrX:25310289-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 63, 67 |
| Conread position: | 17-317 |
| Cow position: | chrX:29045680-29045380 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-327 |
| Cow position: | chrX:13826717-13826407 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 69, 83 |
| Conread position: | 17-379 |
| Cow position: | chrX:29045029-29044667 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 17-380 |
| Cow position: | chrX:25324768-25324405 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 84, 75 |
| Conread position: | 17-381 |
| Cow position: | chrX:25309785-25310149 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 63 |
| Conread position: | 17-381 |
| Cow position: | chrX:25309869-25310233 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-381 |
| Cow position: | chrX:25309953-25310317 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 67 |
| Conread position: | 17-381 |
| Cow position: | chrX:25324852-25324488 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 9 |
| Conread position: | 17-381 |
| Cow position: | chrX:25324936-25324572 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 95, 74 |
| Conread position: | 17-381 |
| Cow position: | chrX:29045281-29044917 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-383 |
| Cow position: | chrX:25310037-25310403 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-383 |
| Cow position: | chrX:25324684-25324318 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 254, 246 |
| Conread position: | 17-383 |
| Cow position: | chrX:25325020-25324654 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 223 |
| Conread position: | 17-383 |
| Cow position: | chrX:25325440-25325074 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 242 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 146, 155 |
| Conread position: | 17-383 |
| Cow position: | chrX:29045113-29044747 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 61 |
| Conread position: | 18-257 |
| Cow position: | chrX:12627837-12628076 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 157, 144 |
| Conread position: | 18-330 |
| Cow position: | chrX:12627586-12627897 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 19-381 |
| Cow position: | chrX:25325606-25325244 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 82, 63 |
| Conread position: | 23-368 |
| Cow position: | chrX:29045758-29045413 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 159, 163 |
| Conread position: | 29-327 |
| Cow position: | chrX:12627430-12627726 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 156, 54 |
| Conread position: | 29-381 |
| Cow position: | chrX:25309713-25310065 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-328 |
| Cow position: | chrX:12627765-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 76, 50 |
| Conread position: | 35-384 |
| Cow position: | chrX:29045830-29045481 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 60, 51 |
| Conread position: | 53-376 |
| Cow position: | chrX:13826933-13826610 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 100-381 |
| Cow position: | chrX:25309700-25309981 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 103-381 |
| Cow position: | chrX:29045848-29045568 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 130-383 |
| Cow position: | chrX:29045336-29045083 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 197-384 |
| Cow position: | chrX:25309713-25309900 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 43 |
Show alignments to all cow chromosomes.