Cow genome map

Conread name: rpigcb_10554.y1

Conread position: 2-396
Cow position: chr14:3127875-3127478 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 242
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 32, 339

Conread position: 2-470
Cow position: chr14:25876634-25877105 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 292
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 80

Conread position: 5-397
Cow position: chr14:25910897-25911292 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 242
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 28, 92

Conread position: 5-443
Cow position: chr14:25860342-25860783 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 269
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 28, 77

Conread position: 5-458
Cow position: chr14:25836197-25836653 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 282
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 30, 0

Conread position: 5-459
Cow position: chr14:25895096-25895553 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 274
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 28, 73

Conread position: 5-462
Cow position: chr14:25895852-25896312 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 276
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 29, 77

Conread position: 5-467
Cow position: chr14:25859334-25859799 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 282
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 28, 51

Conread position: 5-470
Cow position: chr14:25795032-25794564 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 273
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 5-470
Cow position: chr14:25859250-25859718 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 292
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 33, 92

Conread position: 5-470
Cow position: chr14:25859418-25859886 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 273
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 28, 302

Conread position: 5-470
Cow position: chr14:25860090-25860558 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 280
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 21

Conread position: 5-470
Cow position: chr14:25876889-25877357 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 296
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 28, 92

Conread position: 7-470
Cow position: chr14:3080274-3079808 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 280
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 32, 82

Conread position: 7-470
Cow position: chr14:25859756-25860222 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 286
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 26, 241

Conread position: 7-470
Cow position: chr14:25876723-25877189 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 301
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 26, 48

Conread position: 13-470
Cow position: chr14:3061415-3060955 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 269
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 160

Conread position: 13-470
Cow position: chr14:25836289-25836749 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 270
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 294

Conread position: 13-470
Cow position: chr14:25860266-25860726 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 278
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 20, 84

Conread position: 13-470
Cow position: chr14:25877317-25877777 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 285
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 20, 84

Conread position: 14-470
Cow position: chr14:25859679-25860138 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 283
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 19, 41

Conread position: 14-470
Cow position: chr14:25860015-25860474 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 276
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 19, 404

Conread position: 14-470
Cow position: chr14:25877066-25877525 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 271
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 404

Conread position: 21-397
Cow position: chr14:25877496-25877872 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 237
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 57, 48

Conread position: 32-396
Cow position: chr14:3127674-3127310 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 227
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 34, 20

Conread position: 32-470
Cow position: chr14:3155994-3156432 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 262
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 42, 54

Conread position: 33-437
Cow position: chr14:3156079-3156483 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 249
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 39, 30

Conread position: 34-456
Cow position: chr14:25877425-25877847 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 255
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 65, 45

Conread position: 34-470
Cow position: chr14:25795084-25794648 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 267
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 28, 50

Conread position: 34-470
Cow position: chr14:25895800-25896236 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 258
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 292, 286

Conread position: 37-470
Cow position: chr14:680324-680757 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 260
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 61, 57

Conread position: 42-470
Cow position: chr14:3080992-3080564 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 258
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 107, 112

Conread position: 52-444
Cow position: chr14:3080059-3079666 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 237
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 35

Conread position: 52-470
Cow position: chr14:447620-448039 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 265
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 20, 170

Conread position: 58-470
Cow position: chr14:25835917-25836329 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 266
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 21, 28

Conread position: 67-470
Cow position: chr14:680186-680589 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 239
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 109, 116

Conread position: 71-470
Cow position: chr14:680694-681093 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 237
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 344, 351

Conread position: 71-470
Cow position: chr14:25836686-25837085 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 241
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 350, 344

Conread position: 71-470
Cow position: chr14:25876370-25876769 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 254
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 115, 121

Conread position: 73-469
Cow position: chr14:3128053-3127657 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 239
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 343, 349

Conread position: 76-470
Cow position: chr14:3080622-3080228 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 246
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 257, 262

Conread position: 76-470
Cow position: chr14:25783484-25783878 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 254
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 77-470
Cow position: chr14:25836102-25836497 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 238
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 257

Conread position: 78-470
Cow position: chr14:3080871-3080480 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 240
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 255, 7

Conread position: 81-470
Cow position: chr14:25876548-25876937 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 250
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 18, 13

Conread position: 83-458
Cow position: chr14:25859247-25859622 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 231
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 75, 87

Conread position: 84-470
Cow position: chr14:25836195-25836581 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 241
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 254, 248

Conread position: 85-404
Cow position: chr14:3155474-3155793 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 194
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 75, 85

Conread position: 85-450
Cow position: chr14:3080697-3080332 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 229
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 332, 337

Conread position: 85-456
Cow position: chr14:25836868-25837239 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 240
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 95, 89

Conread position: 85-458
Cow position: chr14:25896019-25896392 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 222
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 252, 247

Conread position: 85-460
Cow position: chr14:3061172-3060797 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 228
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 228, 240

Conread position: 85-468
Cow position: chr14:25794781-25794398 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 229
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 138, 148

Conread position: 85-470
Cow position: chr14:680540-680925 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 238
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 248, 253

Conread position: 85-470
Cow position: chr14:680792-681177 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 229
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 85-470
Cow position: chr14:680876-681261 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 230
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 68, 53

Conread position: 85-470
Cow position: chr14:3127705-3127320 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 234
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 244, 225

Conread position: 85-470
Cow position: chr14:25783409-25783794 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 245
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 28, 17

Conread position: 85-470
Cow position: chr14:25783577-25783962 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 239
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 85-470
Cow position: chr14:25783661-25784046 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 240
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 85-470
Cow position: chr14:25783745-25784130 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 244
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 75, 85

Conread position: 85-470
Cow position: chr14:25783829-25784214 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 238
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 85-470
Cow position: chr14:25783913-25784298 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 239
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 85-470
Cow position: chr14:25783997-25784382 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 85-470
Cow position: chr14:25784081-25784466 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 239
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 85-470
Cow position: chr14:25784249-25784634 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 241
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 322, 316

Conread position: 85-470
Cow position: chr14:25784333-25784718 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 246
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 327, 315

Conread position: 85-470
Cow position: chr14:25794613-25794227 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 233
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 280, 338

Conread position: 85-470
Cow position: chr14:25794697-25794311 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 237
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 357, 0

Conread position: 85-470
Cow position: chr14:25794865-25794480 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 247
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 158, 148

Conread position: 85-470
Cow position: chr14:25795117-25794732 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 234
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 111, 121

Conread position: 85-470
Cow position: chr14:25836448-25836833 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 241
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 337, 330

Conread position: 85-470
Cow position: chr14:25836784-25837169 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 251
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 14, 9

Conread position: 85-470
Cow position: chr14:25859585-25859970 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 242
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 73, 85

Conread position: 85-470
Cow position: chr14:25859921-25860306 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 240
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 9

Conread position: 85-470
Cow position: chr14:25876636-25877021 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 248
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 14, 9

Conread position: 85-470
Cow position: chr14:25876888-25877273 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 233
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 85-470
Cow position: chr14:25910896-25911281 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 243
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 9

Conread position: 91-470
Cow position: chr14:3080777-3080396 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 245
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 12, 0

Conread position: 96-470
Cow position: chr14:25784176-25784550 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 240
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 96-470
Cow position: chr14:25859176-25859550 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 228
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 52, 39

Conread position: 96-470
Cow position: chr14:25876227-25876601 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 223
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 311, 323

Conread position: 96-470
Cow position: chr14:25895694-25896068 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 228
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 326, 302

Conread position: 97-396
Cow position: chr14:433971-434270 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 188
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 226, 216

Conread position: 97-470
Cow position: chr14:433887-434260 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 225
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 302, 325

Conread position: 97-470
Cow position: chr14:680636-681009 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 226
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 97-470
Cow position: chr14:3061244-3060871 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 226
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 158, 145

Conread position: 97-470
Cow position: chr14:3080517-3080144 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 220
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 97-470
Cow position: chr14:3128113-3127740 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 222
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 97-470
Cow position: chr14:25910824-25911197 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 235
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 176, 171

Conread position: 101-470
Cow position: chr14:3155406-3155775 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 224
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 69

Conread position: 106-470
Cow position: chr14:25836049-25836413 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 233
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 315, 309

Conread position: 169-470
Cow position: chr14:3155963-3156264 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 185
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 205-470
Cow position: chr14:25783361-25783626 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 168
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 250-470
Cow position: chr14:420620-420841 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 149
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 10, 0

Show alignments to all cow chromosomes.