Cow genome map
| Conread name: | rpigcb_10554.y1 |
| Conread position: | 2-470 |
| Cow position: | chr25:33298960-33299431 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 5-360 |
| Cow position: | chr25:33127866-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 5-404 |
| Cow position: | chr25:34447422-34447816 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 33, 50 |
| Conread position: | 5-457 |
| Cow position: | chr25:33305338-33304888 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 5-469 |
| Cow position: | chr25:34769724-34769257 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 33, 167 |
| Conread position: | 5-470 |
| Cow position: | chr25:33157325-33156857 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 34, 336 |
| Conread position: | 5-470 |
| Cow position: | chr25:33157409-33156941 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 298 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 5-470 |
| Cow position: | chr25:34447002-34447470 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 5-470 |
| Cow position: | chr25:34769976-34769508 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 84 |
| Conread position: | 5-470 |
| Cow position: | chr25:34770060-34769592 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 293 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 33, 84 |
| Conread position: | 6-447 |
| Cow position: | chr25:23420364-23420808 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 7-470 |
| Cow position: | chr25:33298629-33299095 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 9-469 |
| Cow position: | chr25:33157237-33156775 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 292 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 16-470 |
| Cow position: | chr25:33144924-33145378 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 17, 88 |
| Conread position: | 32-470 |
| Cow position: | chr25:33157463-33157025 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 274 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 32-470 |
| Cow position: | chr25:33298573-33299011 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 32-470 |
| Cow position: | chr25:33299077-33299515 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-470 |
| Cow position: | chr25:33299161-33299599 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 67, 62 |
| Conread position: | 32-470 |
| Cow position: | chr25:36800893-36801331 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 136, 107 |
| Conread position: | 36-470 |
| Cow position: | chr25:33298913-33299347 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-389 |
| Cow position: | chr25:36801558-36801910 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 62, 57 |
| Conread position: | 37-470 |
| Cow position: | chr25:33299334-33299767 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-470 |
| Cow position: | chr25:326429-326861 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 52-444 |
| Cow position: | chr25:33127831-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 12, 253 |
| Conread position: | 52-469 |
| Cow position: | chr25:34769843-34769425 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 261 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 53-470 |
| Cow position: | chr25:33298762-33299179 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 27, 33 |
| Conread position: | 57-470 |
| Cow position: | chr25:33298850-33299263 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 170, 166 |
| Conread position: | 64-389 |
| Cow position: | chr25:33299445-33299770 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-470 |
| Cow position: | chr25:34447155-34447554 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 71-470 |
| Cow position: | chr25:36801340-36801739 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-470 |
| Cow position: | chr25:33299289-33299683 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 80-470 |
| Cow position: | chr25:36801517-36801907 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 252 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 85-397 |
| Cow position: | chr25:34769557-34769245 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 85-401 |
| Cow position: | chr25:18642192-18641873 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 61, 50 |
| Conread position: | 85-413 |
| Cow position: | chr25:23420530-23420858 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 85-469 |
| Cow position: | chr25:34769725-34769341 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 244 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 85-470 |
| Cow position: | chr25:22235892-22236277 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 238, 226 |
| Conread position: | 85-470 |
| Cow position: | chr25:33305421-33305042 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 230, 17 |
| Conread position: | 99-469 |
| Cow position: | chr25:23420376-23420746 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 107-448 |
| Cow position: | chr25:326924-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-470 |
| Cow position: | chr25:34770103-34769760 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 188, 180 |
| Conread position: | 153-470 |
| Cow position: | chr25:36801338-36801655 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 168-470 |
| Cow position: | chr25:18642193-18641888 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 124, 241 |
| Conread position: | 168-470 |
| Cow position: | chr25:36800693-36800995 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 171-470 |
| Cow position: | chr25:33306397-33306107 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 144, 53 |
| Conread position: | 172-458 |
| Cow position: | chr25:23420365-23420651 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 175-470 |
| Cow position: | chr25:33127787-33128082 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 186-470 |
| Cow position: | chr25:33298475-33298759 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 84 |
| Conread position: | 187-470 |
| Cow position: | chr25:34446935-34447218 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 228, 235 |
| Conread position: | 204-470 |
| Cow position: | chr25:33127732-33127998 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 226-470 |
| Cow position: | chr25:23420335-23420579 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 253-470 |
| Cow position: | chr25:33157494-33157277 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 253-470 |
| Cow position: | chr25:34770145-34769928 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 164, 169 |
Show alignments to all cow chromosomes.