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Cow genome map

           
Conread name:
           
rpigcb_11416.y1
        

               
Conread position:
               
1-280
               

               
Cow position:
               
chr13:32253496-32253205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr13:19239762-19240062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
118, 84
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr13:53575218-53574914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
103, 168
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr13:19566575-19566888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr13:46427576-46427900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr13:504189-504527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr13:2138323-2137983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr13:58740432-58740765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 29
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr13:33333526-33333184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 174
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr13:5331193-5331537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr13:18097767-18097420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr13:17318518-17318173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
102, 18
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr13:7608999-7609352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 268
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr13:34376675-34376318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 352
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr13:31730716-31730348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chr13:45933606-45934004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr13:6719309-6718835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr13:8781763-8782248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-492
               

               
Cow position:
               
chr13:25694354-25694836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 257
               

               
Conread position:
               
1-531
               

               
Cow position:
               
chr13:28699677-28700227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 91
               

               
Conread position:
               
1-534
               

               
Cow position:
               
chr13:13333099-13332535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1-547
               

               
Cow position:
               
chr13:838552-837982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-549
               

               
Cow position:
               
chr13:3657495-3656927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 479
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr13:35760404-35760971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 85
               

               
Conread position:
               
1-558
               

               
Cow position:
               
chr13:11795844-11795266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1-558
               

               
Cow position:
               
chr13:20571855-20571284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 293
               

               
Conread position:
               
1-558
               

               
Cow position:
               
chr13:25882090-25882664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 29
               

               
Conread position:
               
1-562
               

               
Cow position:
               
chr13:20242642-20243192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
167, 37
               

               
Conread position:
               
1-562
               

               
Cow position:
               
chr13:34993824-34994382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 200
               

               
Conread position:
               
1-562
               

               
Cow position:
               
chr13:41337814-41337243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 175
               

               
Conread position:
               
1-569
               

               
Cow position:
               
chr13:1591301-1590705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 336
               

               
Conread position:
               
1-569
               

               
Cow position:
               
chr13:2725955-2725360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-569
               

               
Cow position:
               
chr13:33907898-33907291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 144
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr13:680906-681501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr13:3021630-3021035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr13:11390113-11390708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr13:13126860-13126280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 333
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr13:19102818-19102227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr13:26204603-26204009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 92
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr13:29055573-29054978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr13:33523103-33522506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr13:53157534-53156939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 266
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr13:55337598-55338185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-570
               

               
Cow position:
               
chr13:58313187-58313782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:644792-645375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 138
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:5498947-5498354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 516
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:14303128-14302536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 19
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:14400222-14399624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:16807452-16808033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 181
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:18330270-18329674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:20538688-20538120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 74
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:30469260-30468667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 33
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:31608584-31607987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 83
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:32080731-32081327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 482
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:32734332-32733740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 487
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:32922455-32921862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 162
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:34905719-34905143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 337
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:36936587-36937170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 476
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:39911260-39911847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 347
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:42087273-42086682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 173
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:43975096-43974507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 316
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:49976525-49977121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 367
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:50079712-50079116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 18
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:50112321-50112917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 532
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chr13:60646731-60646134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-572
               

               
Cow position:
               
chr13:38612079-38612663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 189
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chr13:21906063-21905459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chr13:22907413-22906820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 20
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chr13:28131361-28131956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 462
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chr13:38013795-38013213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 91
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chr13:46055798-46056395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 18
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chr13:53051691-53052289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chr13:56692125-56692723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-577
               

               
Cow position:
               
chr13:23266974-23266377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 506
               

               
Conread position:
               
1-577
               

               
Cow position:
               
chr13:32794482-32793885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 47
               

               
Conread position:
               
1-577
               

               
Cow position:
               
chr13:34508967-34508375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 142
               

               
Conread position:
               
1-577
               

               
Cow position:
               
chr13:44324106-44323512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
4-339
               

               
Cow position:
               
chr13:30652422-30652080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 51
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr13:2805424-2804921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
4-554
               

               
Cow position:
               
chr13:57027112-57027659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 51
               

               
Conread position:
               
4-559
               

               
Cow position:
               
chr13:20564125-20563542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 290
               

               
Conread position:
               
4-562
               

               
Cow position:
               
chr13:10732842-10733407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 54
               

               
Conread position:
               
4-562
               

               
Cow position:
               
chr13:17253086-17252531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
102, 38
               

               
Conread position:
               
4-571
               

               
Cow position:
               
chr13:4486711-4487304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 290
               

               
Conread position:
               
4-571
               

               
Cow position:
               
chr13:6665270-6664677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
4-571
               

               
Cow position:
               
chr13:11826894-11826333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 124
               

               
Conread position:
               
4-571
               

               
Cow position:
               
chr13:21837439-21836846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr13:52459302-52459020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 31
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chr13:1442252-1442591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
63, 219
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr13:17485450-17485790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
102, 167
               

               
Conread position:
               
5-406
               

               
Cow position:
               
chr13:54238592-54238166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 292
               

               
Conread position:
               
5-465
               

               
Cow position:
               
chr13:60425891-60426377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 60
               

               
Conread position:
               
5-487
               

               
Cow position:
               
chr13:18815845-18815337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 129
               

               
Conread position:
               
5-562
               

               
Cow position:
               
chr13:51184171-51184748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 88
               

               
Conread position:
               
5-577
               

               
Cow position:
               
chr13:32774486-32773899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 95
               

               
Conread position:
               
7-570
               

               
Cow position:
               
chr13:50190210-50189624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 387
               

               
Conread position:
               
8-577
               

               
Cow position:
               
chr13:33632253-33631693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
9-331
               

               
Cow position:
               
chr13:32955598-32955263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
9-331
               

               
Cow position:
               
chr13:32982539-32982204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
9-341
               

               
Cow position:
               
chr13:3001479-3001144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
186, 95
               

               
Conread position:
               
9-510
               

               
Cow position:
               
chr13:5230102-5229586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 164
               

               
Conread position:
               
9-538
               

               
Cow position:
               
chr13:51481970-51481422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
97, 122
               

               
Conread position:
               
9-543
               

               
Cow position:
               
chr13:3783999-3784552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 76
               

               
Conread position:
               
9-549
               

               
Cow position:
               
chr13:61954106-61954679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 10
               

               
Conread position:
               
9-562
               

               
Cow position:
               
chr13:18122007-18121432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 286
               

               
Conread position:
               
9-562
               

               
Cow position:
               
chr13:34870823-34871399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 534
               

               
Conread position:
               
9-570
               

               
Cow position:
               
chr13:3556275-3556861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 255
               

               
Conread position:
               
9-570
               

               
Cow position:
               
chr13:11254784-11254209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 167
               

               
Conread position:
               
9-571
               

               
Cow position:
               
chr13:4944253-4944841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 430
               

               
Conread position:
               
9-571
               

               
Cow position:
               
chr13:9048458-9049050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 125
               

               
Conread position:
               
9-571
               

               
Cow position:
               
chr13:13902720-13903306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 43
               

               
Conread position:
               
9-571
               

               
Cow position:
               
chr13:15921594-15921009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 190
               

               
Conread position:
               
9-571
               

               
Cow position:
               
chr13:20778597-20778017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 95
               

               
Conread position:
               
9-571
               

               
Cow position:
               
chr13:22781123-22780527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 137
               

               
Conread position:
               
9-571
               

               
Cow position:
               
chr13:34345167-34345753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 137
               

               
Conread position:
               
9-573
               

               
Cow position:
               
chr13:34298443-34299041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
9-577
               

               
Cow position:
               
chr13:570694-571282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 144
               

               
Conread position:
               
9-577
               

               
Cow position:
               
chr13:31989737-31990325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 161
               

               
Conread position:
               
9-577
               

               
Cow position:
               
chr13:33161804-33162405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 310
               

               
Conread position:
               
9-577
               

               
Cow position:
               
chr13:47357718-47357150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 55
               

               
Conread position:
               
10-495
               

               
Cow position:
               
chr13:42088603-42088111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 13
               

               
Conread position:
               
11-341
               

               
Cow position:
               
chr13:15430063-15429737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
196, 103
               

               
Conread position:
               
11-470
               

               
Cow position:
               
chr13:31510009-31510494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 165
               

               
Conread position:
               
11-556
               

               
Cow position:
               
chr13:46462507-46463050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
97, 86
               

               
Conread position:
               
11-562
               

               
Cow position:
               
chr13:21401705-21402244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 44
               

               
Conread position:
               
12-540
               

               
Cow position:
               
chr13:16249076-16248528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 542
               

               
Conread position:
               
14-510
               

               
Cow position:
               
chr13:60466146-60465626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
17-562
               

               
Cow position:
               
chr13:34190118-34190675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 157
               

               
Conread position:
               
20-562
               

               
Cow position:
               
chr13:42115120-42114568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 274
               

               
Conread position:
               
22-559
               

               
Cow position:
               
chr13:24703516-24702965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
157, 85
               

               
Conread position:
               
25-573
               

               
Cow position:
               
chr13:22084651-22085222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 51
               

               
Conread position:
               
27-274
               

               
Cow position:
               
chr13:47301506-47301765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
29-577
               

               
Cow position:
               
chr13:12618007-12618559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 45
               

               
Conread position:
               
30-559
               

               
Cow position:
               
chr13:38897198-38897738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 313
               

               
Conread position:
               
30-562
               

               
Cow position:
               
chr13:26173462-26172907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 128
               

               
Conread position:
               
37-318
               

               
Cow position:
               
chr13:43383300-43383588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
64, 86
               

               
Conread position:
               
37-577
               

               
Cow position:
               
chr13:55405599-55406148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 145
               

               
Conread position:
               
38-380
               

               
Cow position:
               
chr13:19394226-19393871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
38, 66
               

               
Conread position:
               
42-262
               

               
Cow position:
               
chr13:18987731-18987506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
52-402
               

               
Cow position:
               
chr13:46488974-46488620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
57, 41
               

               
Conread position:
               
53-491
               

               
Cow position:
               
chr13:39944414-39944856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
48, 93
               

               
Conread position:
               
53-495
               

               
Cow position:
               
chr13:39951526-39951982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
59-549
               

               
Cow position:
               
chr13:1461619-1461095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 208
               

               
Conread position:
               
65-570
               

               
Cow position:
               
chr13:51298569-51298038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
65-571
               

               
Cow position:
               
chr13:35540325-35540852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 74
               

               
Conread position:
               
73-399
               

               
Cow position:
               
chr13:52085370-52085028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
34, 161
               

               
Conread position:
               
74-394
               

               
Cow position:
               
chr13:52860307-52859978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
8, 13
               

               
Conread position:
               
74-577
               

               
Cow position:
               
chr13:15280215-15280745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
76-573
               

               
Cow position:
               
chr13:52250849-52251350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
86-549
               

               
Cow position:
               
chr13:32166287-32166753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 89
               

               
Conread position:
               
86-562
               

               
Cow position:
               
chr13:4663564-4664057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 7
               

               
Conread position:
               
93-290
               

               
Cow position:
               
chr13:30243274-30243484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
94-268
               

               
Cow position:
               
chr13:19812066-19811880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
106-405
               

               
Cow position:
               
chr13:15256843-15257165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 302
               

               
Conread position:
               
106-552
               

               
Cow position:
               
chr13:49805979-49805527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 184
               

               
Conread position:
               
106-562
               

               
Cow position:
               
chr13:5717727-5717255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 282
               

               
Conread position:
               
106-570
               

               
Cow position:
               
chr13:9537204-9537687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
106-573
               

               
Cow position:
               
chr13:48945972-48945472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
109-577
               

               
Cow position:
               
chr13:21134698-21135189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 179
               

               
Conread position:
               
110-573
               

               
Cow position:
               
chr13:28131056-28130573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 350
               

               
Conread position:
               
111-553
               

               
Cow position:
               
chr13:48659408-48659847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
63, 50
               

               
Conread position:
               
114-562
               

               
Cow position:
               
chr13:32152812-32152354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 57
               

               
Conread position:
               
114-573
               

               
Cow position:
               
chr13:21108133-21107674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 154
               

               
Conread position:
               
114-573
               

               
Cow position:
               
chr13:46459648-46459190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
65, 47
               

               
Conread position:
               
115-320
               

               
Cow position:
               
chr13:26381691-26381903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chr13:24931845-24931370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 55
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr13:48627537-48627986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 162
               

               
Conread position:
               
130-577
               

               
Cow position:
               
chr13:13312578-13313046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
131-577
               

               
Cow position:
               
chr13:11822949-11822492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 227
               

               
Conread position:
               
134-333
               

               
Cow position:
               
chr13:15525777-15525569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
135-571
               

               
Cow position:
               
chr13:15447013-15446586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 36
               

               
Conread position:
               
138-570
               

               
Cow position:
               
chr13:7870567-7870114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 326
               

               
Conread position:
               
143-571
               

               
Cow position:
               
chr13:6342882-6343333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
144-571
               

               
Cow position:
               
chr13:28414288-28413841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 242
               

               
Conread position:
               
146-495
               

               
Cow position:
               
chr13:30241568-30241937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
45, 320
               

               
Conread position:
               
149-495
               

               
Cow position:
               
chr13:16345138-16344780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
150-559
               

               
Cow position:
               
chr13:54863960-54864377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
153-441
               

               
Cow position:
               
chr13:47189027-47189330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 112
               

               
Conread position:
               
155-573
               

               
Cow position:
               
chr13:41807711-41807288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 45
               

               
Conread position:
               
157-505
               

               
Cow position:
               
chr13:28449679-28449310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
163-573
               

               
Cow position:
               
chr13:46737153-46736735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
171-548
               

               
Cow position:
               
chr13:28171991-28171599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
20, 325
               

               
Conread position:
               
182-571
               

               
Cow position:
               
chr13:43593875-43594281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
192-562
               

               
Cow position:
               
chr13:14716411-14716795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 172
               

               
Conread position:
               
212-507
               

               
Cow position:
               
chr13:45072400-45072692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
212-535
               

               
Cow position:
               
chr13:12572366-12572034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
212-577
               

               
Cow position:
               
chr13:24059404-24059797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
220-562
               

               
Cow position:
               
chr13:32905797-32905447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
220-571
               

               
Cow position:
               
chr13:30306501-30306865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 136
               

               
Conread position:
               
221-562
               

               
Cow position:
               
chr13:34038472-34038117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
221-569
               

               
Cow position:
               
chr13:19638526-19638887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 61
               

               
Conread position:
               
221-570
               

               
Cow position:
               
chr13:14590426-14590063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
221-571
               

               
Cow position:
               
chr13:2799970-2800335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
221-571
               

               
Cow position:
               
chr13:60967691-60967330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
222-577
               

               
Cow position:
               
chr13:57217552-57217911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
224-444
               

               
Cow position:
               
chr13:17456190-17456422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
113, 97
               

               
Conread position:
               
224-480
               

               
Cow position:
               
chr13:47313608-47313337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
224-486
               

               
Cow position:
               
chr13:43628385-43628659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
224-492
               

               
Cow position:
               
chr13:44645623-44645353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 194
               

               
Conread position:
               
224-510
               

               
Cow position:
               
chr13:3786474-3786772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
224-525
               

               
Cow position:
               
chr13:25825895-25825588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
79, 70
               

               
Conread position:
               
224-540
               

               
Cow position:
               
chr13:54215971-54216306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
224-551
               

               
Cow position:
               
chr13:1840320-1839978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
102, 310
               

               
Conread position:
               
224-562
               

               
Cow position:
               
chr13:18975622-18975293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
224-570
               

               
Cow position:
               
chr13:4615101-4615456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 143
               

               
Conread position:
               
224-570
               

               
Cow position:
               
chr13:6869398-6869753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
111, 58
               

               
Conread position:
               
224-570
               

               
Cow position:
               
chr13:47023609-47023249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
224-570
               

               
Cow position:
               
chr13:55574167-55573809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 11
               

               
Conread position:
               
224-571
               

               
Cow position:
               
chr13:36346891-36346540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 31
               

               
Conread position:
               
224-573
               

               
Cow position:
               
chr13:30505350-30504994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 216
               

               
Conread position:
               
224-573
               

               
Cow position:
               
chr13:43891911-43892274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
224-576
               

               
Cow position:
               
chr13:3015265-3015632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 312
               

               
Conread position:
               
226-562
               

               
Cow position:
               
chr13:60219186-60219531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 168
               

               
Conread position:
               
226-577
               

               
Cow position:
               
chr13:48377702-48378058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
69, 53
               

               
Conread position:
               
227-558
               

               
Cow position:
               
chr13:50680621-50680955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
112, 16
               

               
Conread position:
               
229-562
               

               
Cow position:
               
chr13:47006848-47007188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 64
               

               
Conread position:
               
234-573
               

               
Cow position:
               
chr13:60695709-60695369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
61, 130
               

               
Conread position:
               
242-571
               

               
Cow position:
               
chr13:51332185-51332527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 235
               

               
Conread position:
               
256-471
               

               
Cow position:
               
chr13:19322372-19322147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
258-573
               

               
Cow position:
               
chr13:6417664-6417991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
15, 199
               

               
Conread position:
               
266-571
               

               
Cow position:
               
chr13:7365586-7365905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
270-559
               

               
Cow position:
               
chr13:60489434-60489732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
279-573
               

               
Cow position:
               
chr13:47590300-47590607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
58, 230
               

               
Conread position:
               
284-548
               

               
Cow position:
               
chr13:46597991-46597720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
57, 218
               

               
Conread position:
               
296-562
               

               
Cow position:
               
chr13:11289992-11290261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
45, 67
               

               
Conread position:
               
305-561
               

               
Cow position:
               
chr13:46428111-46428377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
309-549
               

               
Cow position:
               
chr13:56026317-56026553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
79, 88
               
Show alignments to all cow chromosomes.