Cow genome map
| Conread name: | rpigcb_11416.y1 | 
| Conread position: | 1-274 | 
| Cow position: | chr3:44101040-44101332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 1-276 | 
| Cow position: | chr3:57554772-57555052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 100, 61 | 
| Conread position: | 1-277 | 
| Cow position: | chr3:7773005-7772735 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 193, 103 | 
| Conread position: | 1-283 | 
| Cow position: | chr3:22338903-22339195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 266 | 
| Conread position: | 1-290 | 
| Cow position: | chr3:33692055-33691754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-318 | 
| Cow position: | chr3:1033857-1034186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-320 | 
| Cow position: | chr3:32412491-32412160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-322 | 
| Cow position: | chr3:4191942-4191609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-330 | 
| Cow position: | chr3:2790746-2791087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-333 | 
| Cow position: | chr3:1739878-1739534 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-333 | 
| Cow position: | chr3:32490718-32490374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-333 | 
| Cow position: | chr3:35342645-35342989 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-333 | 
| Cow position: | chr3:42977589-42977254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 193, 103 | 
| Conread position: | 1-333 | 
| Cow position: | chr3:68273835-68274179 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-333 | 
| Cow position: | chr3:68510341-68510000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-335 | 
| Cow position: | chr3:63239035-63238695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 0 | 
| Conread position: | 1-341 | 
| Cow position: | chr3:66736570-66736226 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 192, 92 | 
| Conread position: | 1-341 | 
| Cow position: | chr3:74848169-74847834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 115, 103 | 
| Conread position: | 1-353 | 
| Cow position: | chr3:19947218-19947565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 190, 61 | 
| Conread position: | 1-384 | 
| Cow position: | chr3:33269226-33269620 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-406 | 
| Cow position: | chr3:26596036-26596449 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 106, 61 | 
| Conread position: | 1-408 | 
| Cow position: | chr3:56719331-56718910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 0 | 
| Conread position: | 1-408 | 
| Cow position: | chr3:74850152-74849739 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 105, 213 | 
| Conread position: | 1-417 | 
| Cow position: | chr3:77726455-77726872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 106, 129 | 
| Conread position: | 1-424 | 
| Cow position: | chr3:49134542-49134109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 397 | 
| Conread position: | 1-426 | 
| Cow position: | chr3:80871924-80872374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 90, 215 | 
| Conread position: | 1-437 | 
| Cow position: | chr3:49930830-49931290 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-447 | 
| Cow position: | chr3:46858288-46857819 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 29 | 
| Conread position: | 1-453 | 
| Cow position: | chr3:11384312-11384780 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 160 | 
| Conread position: | 1-453 | 
| Cow position: | chr3:54087376-54086915 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 85 | 
| Conread position: | 1-473 | 
| Cow position: | chr3:46224889-46225371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 171 | 
| Conread position: | 1-484 | 
| Cow position: | chr3:40826392-40826898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 160 | 
| Conread position: | 1-491 | 
| Cow position: | chr3:33326377-33326891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 301 | 
| Conread position: | 1-494 | 
| Cow position: | chr3:24573166-24572657 (view UCSC Genome Browser custom track) | 
| Alignm length: | 516 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 23 | 
| Conread position: | 1-494 | 
| Cow position: | chr3:30351270-30351786 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 364 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 512 | 
| Conread position: | 1-495 | 
| Cow position: | chr3:7476925-7476409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 479 | 
| Conread position: | 1-495 | 
| Cow position: | chr3:57742511-57743022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 61 | 
| Conread position: | 1-495 | 
| Cow position: | chr3:81101073-81101591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 380 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-498 | 
| Cow position: | chr3:13723718-13723196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 523 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 1-498 | 
| Cow position: | chr3:46014685-46014174 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 116 | 
| Conread position: | 1-504 | 
| Cow position: | chr3:63736383-63736904 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 171 | 
| Conread position: | 1-507 | 
| Cow position: | chr3:49999131-49999660 (view UCSC Genome Browser custom track) | 
| Alignm length: | 531 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 526 | 
| Conread position: | 1-512 | 
| Cow position: | chr3:35619552-35620091 (view UCSC Genome Browser custom track) | 
| Alignm length: | 544 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 189 | 
| Conread position: | 1-522 | 
| Cow position: | chr3:6864655-6865189 (view UCSC Genome Browser custom track) | 
| Alignm length: | 542 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 159 | 
| Conread position: | 1-523 | 
| Cow position: | chr3:823096-822549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 548 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 1-525 | 
| Cow position: | chr3:72175311-72174763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 549 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-536 | 
| Cow position: | chr3:5951621-5951072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 554 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 237 | 
| Conread position: | 1-543 | 
| Cow position: | chr3:18814501-18815066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 566 | 
| Alignm identity: | 410 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-543 | 
| Cow position: | chr3:38496790-38497329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 555 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 177 | 
| Conread position: | 1-549 | 
| Cow position: | chr3:16293914-16293349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 576 | 
| Alignm identity: | 410 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 173 | 
| Conread position: | 1-552 | 
| Cow position: | chr3:58950456-58951027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 575 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 305 | 
| Conread position: | 1-555 | 
| Cow position: | chr3:2365902-2365344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 571 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 125 | 
| Conread position: | 1-558 | 
| Cow position: | chr3:18575613-18575048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 582 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 123 | 
| Conread position: | 1-559 | 
| Cow position: | chr3:6528987-6529569 (view UCSC Genome Browser custom track) | 
| Alignm length: | 583 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-562 | 
| Cow position: | chr3:23497763-23497183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 581 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-562 | 
| Cow position: | chr3:27866651-27867232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 587 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 73 | 
| Conread position: | 1-562 | 
| Cow position: | chr3:31934343-31933759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 587 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 134 | 
| Conread position: | 1-562 | 
| Cow position: | chr3:45692043-45691480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 577 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 119 | 
| Conread position: | 1-562 | 
| Cow position: | chr3:48272774-48273364 (view UCSC Genome Browser custom track) | 
| Alignm length: | 591 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 0 | 
| Conread position: | 1-562 | 
| Cow position: | chr3:49463558-49462991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 580 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 29 | 
| Conread position: | 1-562 | 
| Cow position: | chr3:50346813-50347375 (view UCSC Genome Browser custom track) | 
| Alignm length: | 581 | 
| Alignm identity: | 383 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 137 | 
| Conread position: | 1-562 | 
| Cow position: | chr3:54766003-54766533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 567 | 
| Alignm identity: | 389 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 104 | 
| Conread position: | 1-562 | 
| Cow position: | chr3:60185188-60184591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 603 | 
| Alignm identity: | 410 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 157 | 
| Conread position: | 1-562 | 
| Cow position: | chr3:70914269-70913683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 301 | 
| Conread position: | 1-562 | 
| Cow position: | chr3:76187527-76188102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 590 | 
| Alignm identity: | 407 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 47 | 
| Conread position: | 1-562 | 
| Cow position: | chr3:82931619-82932203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 593 | 
| Alignm identity: | 403 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 63 | 
| Conread position: | 1-563 | 
| Cow position: | chr3:77447984-77448554 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 395 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 24 | 
| Conread position: | 1-568 | 
| Cow position: | chr3:18862435-18863025 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 462 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:2074778-2075370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 29 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:2866660-2866065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 0 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:11417541-11418136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 429 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:15416461-15417056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 416 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:19215911-19216487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 590 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 209 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:19881044-19881639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:20475508-20476088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 591 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 287 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:20795288-20795883 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 420 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 0 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:21593279-21593871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 427 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 274 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:23010367-23010941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 193, 91 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:35918559-35919149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 202 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:40048884-40049478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 595 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:40520945-40520350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 427 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:41019319-41018721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 599 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:43084237-43084807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 579 | 
| Alignm identity: | 413 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 343 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:52150291-52149696 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 484 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:55245538-55246133 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:56297379-56297974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:65084929-65085523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 293 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:65473425-65474017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 167 | 
| Conread position: | 1-570 | 
| Cow position: | chr3:74060465-74061057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 51 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:2707874-2707284 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 170 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:2834544-2833948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 420 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:6838024-6838623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 600 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:7246109-7245518 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 159 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:10243656-10244250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 438 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 91 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:12798056-12797471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 599 | 
| Alignm identity: | 409 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 158 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:14680082-14680672 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 420 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 430 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:14863879-14864471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 595 | 
| Alignm identity: | 427 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 173 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:16225872-16226465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 126 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:19753732-19753145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 433 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 139 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:19883465-19884048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 590 | 
| Alignm identity: | 416 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 173 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:20379722-20379129 (view UCSC Genome Browser custom track) | 
| Alignm length: | 595 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 571 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:23204679-23204088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 598 | 
| Alignm identity: | 440 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 133 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:24265197-24265788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 70 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:24443100-24442516 (view UCSC Genome Browser custom track) | 
| Alignm length: | 593 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 61 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:25056684-25057254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 592 | 
| Alignm identity: | 417 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 183 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:25689650-25690217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 403 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 190 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:26742878-26742286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 423 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 461 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:28435704-28435117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 459 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:30615942-30615353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 162 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:33125260-33124668 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 478 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:35612149-35612737 (view UCSC Genome Browser custom track) | 
| Alignm length: | 598 | 
| Alignm identity: | 413 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 149 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:36121170-36121766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:36875066-36874471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 530 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:42508214-42507623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 429 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 263 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:42846343-42846934 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 437 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 136 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:43525744-43525149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 420 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 267 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:45977497-45978090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 173 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:46505763-46506359 (view UCSC Genome Browser custom track) | 
| Alignm length: | 598 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 540 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:47078619-47078022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 598 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 0 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:48603246-48603851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 607 | 
| Alignm identity: | 435 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 472 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:49564012-49564607 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 65 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:50204560-50205163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 605 | 
| Alignm identity: | 429 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 536 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:64653664-64654257 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 18 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:66623207-66623776 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 408 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 179 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:66829944-66829360 (view UCSC Genome Browser custom track) | 
| Alignm length: | 592 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 296 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:66968884-66968288 (view UCSC Genome Browser custom track) | 
| Alignm length: | 598 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 292 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:72633068-72633663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 440 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 293 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:75038847-75038251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 442 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:76000961-76000370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 602 | 
| Alignm identity: | 427 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 20 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:78520042-78520639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 598 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-571 | 
| Cow position: | chr3:83767248-83767835 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 139 | 
| Conread position: | 1-572 | 
| Cow position: | chr3:15663443-15662875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 397 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 48 | 
| Conread position: | 1-573 | 
| Cow position: | chr3:2572522-2573120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 599 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-573 | 
| Cow position: | chr3:13035501-13034903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 599 | 
| Alignm identity: | 433 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-573 | 
| Cow position: | chr3:15656315-15655724 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 127 | 
| Conread position: | 1-573 | 
| Cow position: | chr3:26566771-26567367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 601 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 105 | 
| Conread position: | 1-573 | 
| Cow position: | chr3:26993121-26993714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 427 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 33 | 
| Conread position: | 1-573 | 
| Cow position: | chr3:30321252-30321837 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 423 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 157 | 
| Conread position: | 1-573 | 
| Cow position: | chr3:34557375-34556797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 587 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 260 | 
| Conread position: | 1-573 | 
| Cow position: | chr3:45184988-45184409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 591 | 
| Alignm identity: | 411 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 83 | 
| Conread position: | 1-573 | 
| Cow position: | chr3:47272885-47272286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 601 | 
| Alignm identity: | 443 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 297 | 
| Conread position: | 1-573 | 
| Cow position: | chr3:56485265-56484662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 604 | 
| Alignm identity: | 427 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-573 | 
| Cow position: | chr3:76864426-76865024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 599 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 0 | 
| Conread position: | 1-577 | 
| Cow position: | chr3:18353376-18352765 (view UCSC Genome Browser custom track) | 
| Alignm length: | 613 | 
| Alignm identity: | 420 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 218 | 
| Conread position: | 1-577 | 
| Cow position: | chr3:18759427-18758809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 621 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 354 | 
| Conread position: | 1-577 | 
| Cow position: | chr3:37627887-37628479 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 412 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 25 | 
| Conread position: | 1-577 | 
| Cow position: | chr3:39555592-39555006 (view UCSC Genome Browser custom track) | 
| Alignm length: | 591 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 333 | 
| Conread position: | 1-577 | 
| Cow position: | chr3:49542206-49541612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 601 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 145 | 
| Conread position: | 3-573 | 
| Cow position: | chr3:45675781-45675185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 0 | 
| Conread position: | 4-276 | 
| Cow position: | chr3:34027877-34027593 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 4-283 | 
| Cow position: | chr3:37280393-37280684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 4-334 | 
| Cow position: | chr3:45311790-45312118 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 197 | 
| Conread position: | 4-336 | 
| Cow position: | chr3:75165071-75164737 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 73, 192 | 
| Conread position: | 4-406 | 
| Cow position: | chr3:27454935-27454515 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 0 | 
| Conread position: | 4-497 | 
| Cow position: | chr3:18886458-18886972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 38 | 
| Conread position: | 4-514 | 
| Cow position: | chr3:2904443-2903924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 53 | 
| Conread position: | 4-531 | 
| Cow position: | chr3:55374083-55374628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 550 | 
| Alignm identity: | 397 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 159 | 
| Conread position: | 4-558 | 
| Cow position: | chr3:54863623-54863047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 582 | 
| Alignm identity: | 404 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 41 | 
| Conread position: | 4-562 | 
| Cow position: | chr3:4039934-4039356 (view UCSC Genome Browser custom track) | 
| Alignm length: | 585 | 
| Alignm identity: | 416 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 465 | 
| Conread position: | 4-562 | 
| Cow position: | chr3:6442066-6442646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 583 | 
| Alignm identity: | 411 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 480 | 
| Conread position: | 4-562 | 
| Cow position: | chr3:22867969-22867395 (view UCSC Genome Browser custom track) | 
| Alignm length: | 585 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 74, 38 | 
| Conread position: | 4-562 | 
| Cow position: | chr3:24530700-24531252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 567 | 
| Alignm identity: | 386 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 48 | 
| Conread position: | 4-562 | 
| Cow position: | chr3:60178102-60177533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 575 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 90 | 
| Conread position: | 4-570 | 
| Cow position: | chr3:302229-302811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 586 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 178 | 
| Conread position: | 4-570 | 
| Cow position: | chr3:79668105-79668700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 0 | 
| Conread position: | 4-571 | 
| Cow position: | chr3:3300633-3301215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 413 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 256 | 
| Conread position: | 4-571 | 
| Cow position: | chr3:21179261-21178666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 4-571 | 
| Cow position: | chr3:23287337-23286761 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 420 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 156 | 
| Conread position: | 4-571 | 
| Cow position: | chr3:38869571-38870156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 592 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 100 | 
| Conread position: | 4-571 | 
| Cow position: | chr3:56645333-56644740 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 0 | 
| Conread position: | 4-573 | 
| Cow position: | chr3:24586232-24585635 (view UCSC Genome Browser custom track) | 
| Alignm length: | 602 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 31 | 
| Conread position: | 4-574 | 
| Cow position: | chr3:24455520-24454953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 583 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 154 | 
| Conread position: | 4-577 | 
| Cow position: | chr3:19718261-19717676 (view UCSC Genome Browser custom track) | 
| Alignm length: | 595 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 48 | 
| Conread position: | 4-577 | 
| Cow position: | chr3:23170196-23169640 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 406 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 225, 103 | 
| Conread position: | 4-577 | 
| Cow position: | chr3:30938494-30939098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 607 | 
| Alignm identity: | 416 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 315 | 
| Conread position: | 4-577 | 
| Cow position: | chr3:54788083-54788682 (view UCSC Genome Browser custom track) | 
| Alignm length: | 611 | 
| Alignm identity: | 405 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 23 | 
| Conread position: | 5-277 | 
| Cow position: | chr3:30908802-30909084 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 169 | 
| Conread position: | 5-322 | 
| Cow position: | chr3:31121138-31120809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 0 | 
| Conread position: | 5-336 | 
| Cow position: | chr3:74140912-74140578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 81, 167 | 
| Conread position: | 5-432 | 
| Cow position: | chr3:31396373-31396817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 63 | 
| Conread position: | 5-484 | 
| Cow position: | chr3:3653288-3652805 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 215 | 
| Conread position: | 5-533 | 
| Cow position: | chr3:12673370-12672837 (view UCSC Genome Browser custom track) | 
| Alignm length: | 548 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 69 | 
| Conread position: | 5-552 | 
| Cow position: | chr3:61677537-61678102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 573 | 
| Alignm identity: | 417 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 154 | 
| Conread position: | 5-553 | 
| Cow position: | chr3:38251852-38252390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 562 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 185, 29 | 
| Conread position: | 5-553 | 
| Cow position: | chr3:66847390-66846840 (view UCSC Genome Browser custom track) | 
| Alignm length: | 571 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 19, 63 | 
| Conread position: | 5-558 | 
| Cow position: | chr3:16884298-16883757 (view UCSC Genome Browser custom track) | 
| Alignm length: | 563 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 31 | 
| Conread position: | 5-562 | 
| Cow position: | chr3:6688815-6689393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 595 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 508 | 
| Conread position: | 5-562 | 
| Cow position: | chr3:14284733-14285307 (view UCSC Genome Browser custom track) | 
| Alignm length: | 576 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 164 | 
| Conread position: | 5-562 | 
| Cow position: | chr3:17057064-17056495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 144, 22 | 
| Conread position: | 5-562 | 
| Cow position: | chr3:56696847-56697417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 575 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 229 | 
| Conread position: | 5-562 | 
| Cow position: | chr3:64376711-64376139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 579 | 
| Alignm identity: | 409 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 34 | 
| Conread position: | 5-565 | 
| Cow position: | chr3:944693-945275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 63 | 
| Conread position: | 5-571 | 
| Cow position: | chr3:3031250-3031821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 585 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 38 | 
| Conread position: | 5-571 | 
| Cow position: | chr3:13312007-13311407 (view UCSC Genome Browser custom track) | 
| Alignm length: | 601 | 
| Alignm identity: | 420 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 5-571 | 
| Cow position: | chr3:40285317-40284758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 579 | 
| Alignm identity: | 414 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 286 | 
| Conread position: | 5-572 | 
| Cow position: | chr3:4030752-4031339 (view UCSC Genome Browser custom track) | 
| Alignm length: | 598 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 87 | 
| Conread position: | 5-573 | 
| Cow position: | chr3:17938003-17937425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 592 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 140 | 
| Conread position: | 5-573 | 
| Cow position: | chr3:19108559-19109154 (view UCSC Genome Browser custom track) | 
| Alignm length: | 602 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 70 | 
| Conread position: | 5-573 | 
| Cow position: | chr3:63202244-63202823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 593 | 
| Alignm identity: | 407 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 25 | 
| Conread position: | 5-577 | 
| Cow position: | chr3:24262835-24262247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 595 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 215 | 
| Conread position: | 5-577 | 
| Cow position: | chr3:31418530-31419123 (view UCSC Genome Browser custom track) | 
| Alignm length: | 599 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 174 | 
| Conread position: | 6-322 | 
| Cow position: | chr3:6854627-6854299 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 0 | 
| Conread position: | 6-484 | 
| Cow position: | chr3:56102741-56103238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 87 | 
| Conread position: | 7-577 | 
| Cow position: | chr3:35885120-35884525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 602 | 
| Alignm identity: | 413 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 453 | 
| Conread position: | 8-573 | 
| Cow position: | chr3:6896829-6897417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 595 | 
| Alignm identity: | 411 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 40 | 
| Conread position: | 9-277 | 
| Cow position: | chr3:34116367-34116089 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 97, 32 | 
| Conread position: | 9-321 | 
| Cow position: | chr3:56336955-56336651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 97, 109 | 
| Conread position: | 9-322 | 
| Cow position: | chr3:29574123-29573798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 9-330 | 
| Cow position: | chr3:21004818-21005152 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 39 | 
| Conread position: | 9-441 | 
| Cow position: | chr3:73636884-73637338 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 243 | 
| Conread position: | 9-447 | 
| Cow position: | chr3:64875776-64876237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 9-449 | 
| Cow position: | chr3:39327551-39328005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 148 | 
| Conread position: | 9-481 | 
| Cow position: | chr3:21000086-20999573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 514 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 9-490 | 
| Cow position: | chr3:77426697-77427175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 78 | 
| Conread position: | 9-522 | 
| Cow position: | chr3:36671618-36671078 (view UCSC Genome Browser custom track) | 
| Alignm length: | 542 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 480 | 
| Conread position: | 9-549 | 
| Cow position: | chr3:40337143-40336579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 565 | 
| Alignm identity: | 406 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 9-554 | 
| Cow position: | chr3:3552325-3552882 (view UCSC Genome Browser custom track) | 
| Alignm length: | 563 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 526 | 
| Conread position: | 9-558 | 
| Cow position: | chr3:65582192-65581627 (view UCSC Genome Browser custom track) | 
| Alignm length: | 578 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 93, 125 | 
| Conread position: | 9-562 | 
| Cow position: | chr3:38254650-38255208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 572 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 98, 41 | 
| Conread position: | 9-562 | 
| Cow position: | chr3:56101272-56101829 (view UCSC Genome Browser custom track) | 
| Alignm length: | 576 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 56 | 
| Conread position: | 9-562 | 
| Cow position: | chr3:56148295-56148872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 582 | 
| Alignm identity: | 417 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 457 | 
| Conread position: | 9-562 | 
| Cow position: | chr3:63218943-63219503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 575 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 99 | 
| Conread position: | 9-562 | 
| Cow position: | chr3:68717707-68717132 (view UCSC Genome Browser custom track) | 
| Alignm length: | 577 | 
| Alignm identity: | 408 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 530 | 
| Conread position: | 9-570 | 
| Cow position: | chr3:7155804-7155217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 588 | 
| Alignm identity: | 423 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 9-570 | 
| Cow position: | chr3:14212393-14212980 (view UCSC Genome Browser custom track) | 
| Alignm length: | 588 | 
| Alignm identity: | 414 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 9-570 | 
| Cow position: | chr3:34504120-34503549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 581 | 
| Alignm identity: | 416 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 201 | 
| Conread position: | 9-570 | 
| Cow position: | chr3:37893834-37894419 (view UCSC Genome Browser custom track) | 
| Alignm length: | 588 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 471 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:5474542-5475130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 590 | 
| Alignm identity: | 423 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 474 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:12667707-12668286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 583 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 127 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:31021685-31022265 (view UCSC Genome Browser custom track) | 
| Alignm length: | 588 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 258 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:31224282-31224876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 412 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 43 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:44926817-44927404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 417 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 88 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:47986442-47987030 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:49605438-49604856 (view UCSC Genome Browser custom track) | 
| Alignm length: | 588 | 
| Alignm identity: | 414 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 88 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:49611205-49610625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 587 | 
| Alignm identity: | 412 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 474 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:49908020-49907444 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 408 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 35 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:53880264-53879675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 590 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:59602804-59603391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 590 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 285 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:68696962-68696384 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 173 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:68870747-68870164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 417 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 383 | 
| Conread position: | 9-571 | 
| Cow position: | chr3:68889569-68888982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 259 | 
| Conread position: | 9-572 | 
| Cow position: | chr3:66888193-66887601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 595 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 165 | 
| Conread position: | 9-573 | 
| Cow position: | chr3:56160814-56160234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 590 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 153 | 
| Conread position: | 9-574 | 
| Cow position: | chr3:49387655-49388243 (view UCSC Genome Browser custom track) | 
| Alignm length: | 595 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 154 | 
| Conread position: | 9-577 | 
| Cow position: | chr3:19941894-19942479 (view UCSC Genome Browser custom track) | 
| Alignm length: | 588 | 
| Alignm identity: | 409 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 246 | 
| Conread position: | 9-577 | 
| Cow position: | chr3:37983362-37982769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 595 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 52 | 
| Conread position: | 10-498 | 
| Cow position: | chr3:68344320-68343840 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 24 | 
| Conread position: | 11-383 | 
| Cow position: | chr3:8391389-8391751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 189, 62 | 
| Conread position: | 12-558 | 
| Cow position: | chr3:53047786-53047226 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 54 | 
| Conread position: | 12-573 | 
| Cow position: | chr3:84198790-84199362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 588 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 22 | 
| Conread position: | 12-577 | 
| Cow position: | chr3:50112020-50111459 (view UCSC Genome Browser custom track) | 
| Alignm length: | 582 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 146 | 
| Conread position: | 13-330 | 
| Cow position: | chr3:27245683-27245359 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 159 | 
| Conread position: | 15-374 | 
| Cow position: | chr3:56124555-56124928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 90, 131 | 
| Conread position: | 16-577 | 
| Cow position: | chr3:62794067-62793492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 581 | 
| Alignm identity: | 414 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 191 | 
| Conread position: | 17-577 | 
| Cow position: | chr3:52257504-52256923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 406 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 206 | 
| Conread position: | 20-571 | 
| Cow position: | chr3:49416834-49416260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 579 | 
| Alignm identity: | 419 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 423 | 
| Conread position: | 20-577 | 
| Cow position: | chr3:24351708-24352276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 572 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 391 | 
| Conread position: | 22-571 | 
| Cow position: | chr3:14438969-14438398 (view UCSC Genome Browser custom track) | 
| Alignm length: | 576 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 139 | 
| Conread position: | 23-536 | 
| Cow position: | chr3:70250380-70249860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 531 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 17, 22 | 
| Conread position: | 25-275 | 
| Cow position: | chr3:36571160-36571418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 81, 92 | 
| Conread position: | 26-505 | 
| Cow position: | chr3:597129-597621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 98 | 
| Conread position: | 27-514 | 
| Cow position: | chr3:31810322-31810828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 7, 141 | 
| Conread position: | 27-562 | 
| Cow position: | chr3:27091165-27090621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 553 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 24, 78 | 
| Conread position: | 27-571 | 
| Cow position: | chr3:3837572-3837017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 564 | 
| Alignm identity: | 386 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 147 | 
| Conread position: | 28-323 | 
| Cow position: | chr3:69962823-69962517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 78, 45 | 
| Conread position: | 28-494 | 
| Cow position: | chr3:47341089-47340625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 77, 45 | 
| Conread position: | 28-571 | 
| Cow position: | chr3:22352639-22353204 (view UCSC Genome Browser custom track) | 
| Alignm length: | 570 | 
| Alignm identity: | 405 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 434 | 
| Conread position: | 29-577 | 
| Cow position: | chr3:46752872-46753437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 577 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 54 | 
| Conread position: | 32-435 | 
| Cow position: | chr3:80478042-80477640 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 74, 177 | 
| Conread position: | 33-264 | 
| Cow position: | chr3:36402851-36403093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 72, 0 | 
| Conread position: | 35-399 | 
| Cow position: | chr3:15082905-15082532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 72, 110 | 
| Conread position: | 35-577 | 
| Cow position: | chr3:3885168-3884599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 577 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 82 | 
| Conread position: | 43-562 | 
| Cow position: | chr3:42186506-42187048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 544 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 534 | 
| Conread position: | 44-571 | 
| Cow position: | chr3:6785355-6785904 (view UCSC Genome Browser custom track) | 
| Alignm length: | 551 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 250 | 
| Conread position: | 46-572 | 
| Cow position: | chr3:5886926-5887475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 552 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 271 | 
| Conread position: | 46-573 | 
| Cow position: | chr3:26919770-26920320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 559 | 
| Alignm identity: | 380 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 58 | 
| Conread position: | 52-562 | 
| Cow position: | chr3:75997839-75997315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 535 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 28 | 
| Conread position: | 52-570 | 
| Cow position: | chr3:35109272-35109816 (view UCSC Genome Browser custom track) | 
| Alignm length: | 545 | 
| Alignm identity: | 383 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 52-571 | 
| Cow position: | chr3:26722766-26722229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 547 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 245 | 
| Conread position: | 55-341 | 
| Cow position: | chr3:10412295-10412592 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 50, 241 | 
| Conread position: | 55-536 | 
| Cow position: | chr3:14466812-14466313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 42 | 
| Conread position: | 55-577 | 
| Cow position: | chr3:31748729-31749260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 546 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 127 | 
| Conread position: | 65-333 | 
| Cow position: | chr3:30622932-30623213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 41, 0 | 
| Conread position: | 65-441 | 
| Cow position: | chr3:19795033-19794638 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 340 | 
| Conread position: | 66-548 | 
| Cow position: | chr3:66977734-66978229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 38 | 
| Conread position: | 66-570 | 
| Cow position: | chr3:77697388-77696893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 316, 38 | 
| Conread position: | 67-328 | 
| Cow position: | chr3:30333730-30333996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 39, 64 | 
| Conread position: | 68-340 | 
| Cow position: | chr3:13117991-13117716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 92 | 
| Conread position: | 68-570 | 
| Cow position: | chr3:36862038-36861517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 80 | 
| Conread position: | 70-528 | 
| Cow position: | chr3:42424430-42423957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 87 | 
| Conread position: | 73-454 | 
| Cow position: | chr3:12665204-12665609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 73-562 | 
| Cow position: | chr3:34015478-34015991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 514 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 73-571 | 
| Cow position: | chr3:64024965-64024451 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 316 | 
| Conread position: | 74-406 | 
| Cow position: | chr3:8605837-8605491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 27, 52 | 
| Conread position: | 74-525 | 
| Cow position: | chr3:73416065-73416541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 32, 435 | 
| Conread position: | 74-537 | 
| Cow position: | chr3:2852169-2851682 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 121 | 
| Conread position: | 75-577 | 
| Cow position: | chr3:59864551-59865076 (view UCSC Genome Browser custom track) | 
| Alignm length: | 529 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 99 | 
| Conread position: | 76-536 | 
| Cow position: | chr3:63688840-63688360 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 57 | 
| Conread position: | 78-571 | 
| Cow position: | chr3:579246-579763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 364 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 83-570 | 
| Cow position: | chr3:21779698-21779188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 511 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 86-283 | 
| Cow position: | chr3:57996638-57996847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 86-570 | 
| Cow position: | chr3:36416819-36417329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 511 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 86-570 | 
| Cow position: | chr3:75772055-75771545 (view UCSC Genome Browser custom track) | 
| Alignm length: | 511 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 87-467 | 
| Cow position: | chr3:42500151-42500546 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 217 | 
| Conread position: | 87-562 | 
| Cow position: | chr3:42602737-42603236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 315 | 
| Conread position: | 87-571 | 
| Cow position: | chr3:13248940-13248430 (view UCSC Genome Browser custom track) | 
| Alignm length: | 511 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 88-552 | 
| Cow position: | chr3:173588-174067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 35 | 
| Conread position: | 88-562 | 
| Cow position: | chr3:39214454-39214955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 397 | 
| Conread position: | 88-573 | 
| Cow position: | chr3:52651855-52651362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 33 | 
| Conread position: | 105-514 | 
| Cow position: | chr3:37451202-37451615 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 266 | 
| Conread position: | 106-277 | 
| Cow position: | chr3:51547862-51548042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 106-394 | 
| Cow position: | chr3:34464470-34464770 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 84, 184 | 
| Conread position: | 106-426 | 
| Cow position: | chr3:53787951-53788292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 106-558 | 
| Cow position: | chr3:22272579-22272124 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 58 | 
| Conread position: | 106-571 | 
| Cow position: | chr3:2117549-2118043 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 209 | 
| Conread position: | 106-571 | 
| Cow position: | chr3:46682936-46683424 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 270 | 
| Conread position: | 106-571 | 
| Cow position: | chr3:53518905-53519373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 288 | 
| Conread position: | 106-573 | 
| Cow position: | chr3:35043262-35043752 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 106-573 | 
| Cow position: | chr3:55461554-55461075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 203 | 
| Conread position: | 106-577 | 
| Cow position: | chr3:64171349-64171824 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 153 | 
| Conread position: | 107-539 | 
| Cow position: | chr3:17059349-17058929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 13, 38 | 
| Conread position: | 108-574 | 
| Cow position: | chr3:79595739-79596209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 25 | 
| Conread position: | 112-420 | 
| Cow position: | chr3:70322564-70322238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 112, 202 | 
| Conread position: | 112-562 | 
| Cow position: | chr3:44536879-44536396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 363 | 
| Conread position: | 115-571 | 
| Cow position: | chr3:41207454-41206975 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 445 | 
| Conread position: | 117-573 | 
| Cow position: | chr3:77366570-77366120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 54 | 
| Conread position: | 120-562 | 
| Cow position: | chr3:51254517-51254977 (view UCSC Genome Browser custom track) | 
| Alignm length: | 464 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 139 | 
| Conread position: | 120-571 | 
| Cow position: | chr3:35056098-35056552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 68 | 
| Conread position: | 121-395 | 
| Cow position: | chr3:29582227-29582515 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 86, 78 | 
| Conread position: | 121-562 | 
| Cow position: | chr3:33469540-33469086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 115, 53 | 
| Conread position: | 121-573 | 
| Cow position: | chr3:26891608-26892083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 0 | 
| Conread position: | 122-571 | 
| Cow position: | chr3:64655329-64655795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 0 | 
| Conread position: | 123-566 | 
| Cow position: | chr3:69271721-69272187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 0 | 
| Conread position: | 123-577 | 
| Cow position: | chr3:33633899-33633448 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 224, 75 | 
| Conread position: | 124-573 | 
| Cow position: | chr3:65536235-65536707 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 126-333 | 
| Cow position: | chr3:14028107-14028324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 126-562 | 
| Cow position: | chr3:14279809-14280255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 425 | 
| Conread position: | 129-387 | 
| Cow position: | chr3:49429628-49429370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 212, 101 | 
| Conread position: | 130-477 | 
| Cow position: | chr3:15988066-15988431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 68, 356 | 
| Conread position: | 130-548 | 
| Cow position: | chr3:22235372-22234930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 24 | 
| Conread position: | 130-549 | 
| Cow position: | chr3:33254732-33254297 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 20 | 
| Conread position: | 130-572 | 
| Cow position: | chr3:58766270-58766719 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 72, 306 | 
| Conread position: | 131-558 | 
| Cow position: | chr3:37599864-37600306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 60, 40 | 
| Conread position: | 131-573 | 
| Cow position: | chr3:7677621-7678086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 65, 29 | 
| Conread position: | 133-527 | 
| Cow position: | chr3:70336544-70336155 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 60, 37 | 
| Conread position: | 134-333 | 
| Cow position: | chr3:70215302-70215510 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 60, 0 | 
| Conread position: | 134-517 | 
| Cow position: | chr3:10371507-10371900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 55, 37 | 
| Conread position: | 135-543 | 
| Cow position: | chr3:11784495-11784920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 156 | 
| Conread position: | 136-570 | 
| Cow position: | chr3:14922785-14923241 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 138-481 | 
| Cow position: | chr3:46006239-46006587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 63, 12 | 
| Conread position: | 139-571 | 
| Cow position: | chr3:25753390-25753853 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 154 | 
| Conread position: | 144-448 | 
| Cow position: | chr3:28471494-28471815 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 144-508 | 
| Cow position: | chr3:17460365-17460741 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 46, 15 | 
| Conread position: | 144-558 | 
| Cow position: | chr3:29391981-29391557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 38, 322 | 
| Conread position: | 144-571 | 
| Cow position: | chr3:24432522-24432967 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 427 | 
| Conread position: | 148-524 | 
| Cow position: | chr3:14724264-14724647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 43, 117 | 
| Conread position: | 148-570 | 
| Cow position: | chr3:39921800-39921358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 148-571 | 
| Cow position: | chr3:51235347-51234914 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 83 | 
| Conread position: | 150-509 | 
| Cow position: | chr3:56099863-56099482 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 13, 143 | 
| Conread position: | 150-571 | 
| Cow position: | chr3:20781302-20780870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 106 | 
| Conread position: | 152-342 | 
| Cow position: | chr3:82891180-82891374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 32, 132 | 
| Conread position: | 155-573 | 
| Cow position: | chr3:40205555-40205995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 156-572 | 
| Cow position: | chr3:72390071-72390510 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 109 | 
| Conread position: | 157-573 | 
| Cow position: | chr3:22220296-22220732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 14 | 
| Conread position: | 160-571 | 
| Cow position: | chr3:68500616-68501048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 163-562 | 
| Cow position: | chr3:76136478-76136899 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 321 | 
| Conread position: | 163-563 | 
| Cow position: | chr3:74391746-74391329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 157 | 
| Conread position: | 163-571 | 
| Cow position: | chr3:59118619-59118188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 163-571 | 
| Cow position: | chr3:77472824-77472410 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 24 | 
| Conread position: | 164-538 | 
| Cow position: | chr3:14613193-14613583 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 31, 120 | 
| Conread position: | 165-571 | 
| Cow position: | chr3:16620596-16620163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 10, 422 | 
| Conread position: | 176-577 | 
| Cow position: | chr3:45880916-45881327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 82 | 
| Conread position: | 194-495 | 
| Cow position: | chr3:40978634-40978952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 50, 9 | 
| Conread position: | 200-507 | 
| Cow position: | chr3:64277944-64278261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 137, 33 | 
| Conread position: | 201-573 | 
| Cow position: | chr3:2507441-2507050 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 100 | 
| Conread position: | 205-558 | 
| Cow position: | chr3:29281963-29282329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 19, 243 | 
| Conread position: | 209-569 | 
| Cow position: | chr3:23944180-23944545 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 24 | 
| Conread position: | 212-461 | 
| Cow position: | chr3:18252764-18253021 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 18, 54 | 
| Conread position: | 214-571 | 
| Cow position: | chr3:65178590-65178962 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 69 | 
| Conread position: | 215-571 | 
| Cow position: | chr3:48528246-48528615 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 79, 245 | 
| Conread position: | 215-571 | 
| Cow position: | chr3:64293745-64294100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 14, 61 | 
| Conread position: | 219-514 | 
| Cow position: | chr3:80277676-80277369 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 10, 76 | 
| Conread position: | 219-525 | 
| Cow position: | chr3:16869180-16868864 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 123, 14 | 
| Conread position: | 221-577 | 
| Cow position: | chr3:27547209-27546839 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 122, 54 | 
| Conread position: | 223-572 | 
| Cow position: | chr3:80564023-80564390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 225 | 
| Conread position: | 224-484 | 
| Cow position: | chr3:20074317-20074589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 224-487 | 
| Cow position: | chr3:60891491-60891768 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 61, 12 | 
| Conread position: | 224-495 | 
| Cow position: | chr3:1831627-1831361 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 112, 55 | 
| Conread position: | 224-525 | 
| Cow position: | chr3:37040518-37040817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 26, 121 | 
| Conread position: | 224-549 | 
| Cow position: | chr3:32772290-32772597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 179, 55 | 
| Conread position: | 224-558 | 
| Cow position: | chr3:19958824-19959170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 224-562 | 
| Cow position: | chr3:6024629-6024279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 224-562 | 
| Cow position: | chr3:14647616-14647964 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 108, 171 | 
| Conread position: | 224-562 | 
| Cow position: | chr3:22918752-22919099 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 253 | 
| Conread position: | 224-562 | 
| Cow position: | chr3:54876893-54877220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 117, 235 | 
| Conread position: | 224-562 | 
| Cow position: | chr3:73763402-73763057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 107, 231 | 
| Conread position: | 224-569 | 
| Cow position: | chr3:61538835-61539186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 115, 28 | 
| Conread position: | 224-570 | 
| Cow position: | chr3:4135752-4135390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 224-570 | 
| Cow position: | chr3:12931996-12932356 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 224-570 | 
| Cow position: | chr3:30329439-30329080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 224-570 | 
| Cow position: | chr3:30752813-30753172 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 255 | 
| Conread position: | 224-570 | 
| Cow position: | chr3:49976297-49975939 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 58 | 
| Conread position: | 224-570 | 
| Cow position: | chr3:51256167-51256528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 0 | 
| Conread position: | 224-570 | 
| Cow position: | chr3:58336536-58336896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 224-571 | 
| Cow position: | chr3:13360677-13361037 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 224-571 | 
| Cow position: | chr3:16156753-16157107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 118, 68 | 
| Conread position: | 224-571 | 
| Cow position: | chr3:16332650-16333011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 111, 80 | 
| Conread position: | 224-573 | 
| Cow position: | chr3:521806-522165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 108 | 
| Conread position: | 224-573 | 
| Cow position: | chr3:6170701-6171064 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 224-573 | 
| Cow position: | chr3:39231941-39232304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 224-573 | 
| Cow position: | chr3:50217221-50217584 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 224-576 | 
| Cow position: | chr3:59607522-59607878 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 68 | 
| Conread position: | 224-577 | 
| Cow position: | chr3:67745552-67745182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 10, 286 | 
| Conread position: | 225-562 | 
| Cow position: | chr3:9289837-9290182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 225-570 | 
| Cow position: | chr3:52045789-52045430 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 229-562 | 
| Cow position: | chr3:1299313-1299666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 65 | 
| Conread position: | 229-573 | 
| Cow position: | chr3:16005575-16005207 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 55, 86 | 
| Conread position: | 229-577 | 
| Cow position: | chr3:9639778-9639433 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 107, 27 | 
| Conread position: | 230-562 | 
| Cow position: | chr3:11018688-11019023 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 105, 45 | 
| Conread position: | 232-569 | 
| Cow position: | chr3:6884382-6884734 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 233-571 | 
| Cow position: | chr3:45947286-45946935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 83, 0 | 
| Conread position: | 235-571 | 
| Cow position: | chr3:37020975-37020633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 102, 153 | 
| Conread position: | 237-562 | 
| Cow position: | chr3:12872362-12872681 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 242-573 | 
| Cow position: | chr3:49133152-49132828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 99, 37 | 
| Conread position: | 243-573 | 
| Cow position: | chr3:70074855-70074511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 112, 0 | 
| Conread position: | 245-543 | 
| Cow position: | chr3:11961352-11961654 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 19, 63 | 
| Conread position: | 250-573 | 
| Cow position: | chr3:58027445-58027095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 253-570 | 
| Cow position: | chr3:3372926-3372597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 256-487 | 
| Cow position: | chr3:73305437-73305678 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 81, 166 | 
| Conread position: | 259-562 | 
| Cow position: | chr3:73956103-73956407 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 95 | 
| Conread position: | 259-571 | 
| Cow position: | chr3:24886851-24887176 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 78, 181 | 
| Conread position: | 260-554 | 
| Cow position: | chr3:45699929-45700234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 10, 175 | 
| Conread position: | 263-570 | 
| Cow position: | chr3:80741139-80741460 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 72, 0 | 
| Conread position: | 278-558 | 
| Cow position: | chr3:61955382-61955674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 20, 117 | 
| Conread position: | 315-559 | 
| Cow position: | chr3:51439548-51439306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 122, 12 | 
| Conread position: | 343-577 | 
| Cow position: | chr3:74233432-74233665 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 53, 102 | 
Show alignments to all cow chromosomes.
