Cow genome map

Conread name: rpigcb_11416.y1

Conread position: 1-252
Cow position: chr9:2190214-2190480 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 52, 184

Conread position: 1-257
Cow position: chr9:37181830-37182098 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-257
Cow position: chr9:38679086-38679352 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 105, 173

Conread position: 1-283
Cow position: chr9:9021637-9021343 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-300
Cow position: chr9:10939692-10939993 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 233

Conread position: 1-314
Cow position: chr9:64049243-64049560 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 105, 29

Conread position: 1-318
Cow position: chr9:43225733-43225408 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-322
Cow position: chr9:9871907-9872240 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-331
Cow position: chr9:2214101-2214449 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 245
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 50, 0

Conread position: 1-333
Cow position: chr9:9210111-9210455 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-333
Cow position: chr9:12260396-12260053 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 72

Conread position: 1-333
Cow position: chr9:18539631-18539969 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 72

Conread position: 1-333
Cow position: chr9:45791816-45792160 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-341
Cow position: chr9:9199066-9199410 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 29

Conread position: 1-432
Cow position: chr9:2173503-2173956 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 58

Conread position: 1-437
Cow position: chr9:62764338-62763880 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 56

Conread position: 1-447
Cow position: chr9:20409352-20409801 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 162

Conread position: 1-452
Cow position: chr9:52526119-52526594 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-454
Cow position: chr9:10678957-10678491 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 51

Conread position: 1-454
Cow position: chr9:13187172-13187649 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-472
Cow position: chr9:2873442-2873938 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-484
Cow position: chr9:17303005-17302505 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 121

Conread position: 1-494
Cow position: chr9:54459534-54459016 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-495
Cow position: chr9:26055014-26055516 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 181

Conread position: 1-495
Cow position: chr9:28658081-28657571 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 81

Conread position: 1-514
Cow position: chr9:46667830-46667293 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-525
Cow position: chr9:21461444-21461970 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 103

Conread position: 1-538
Cow position: chr9:6979170-6979728 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 265

Conread position: 1-545
Cow position: chr9:24873979-24873450 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 46

Conread position: 1-549
Cow position: chr9:3806565-3807131 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 51

Conread position: 1-549
Cow position: chr9:30139640-30139074 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 133

Conread position: 1-552
Cow position: chr9:12161576-12162139 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 71

Conread position: 1-553
Cow position: chr9:19078838-19079399 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 37

Conread position: 1-553
Cow position: chr9:37097589-37098135 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 58

Conread position: 1-555
Cow position: chr9:34676434-34675862 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 30

Conread position: 1-558
Cow position: chr9:36844959-36844396 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 43

Conread position: 1-558
Cow position: chr9:51692652-51692079 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 347

Conread position: 1-562
Cow position: chr9:2495773-2495188 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 206

Conread position: 1-562
Cow position: chr9:3075112-3075689 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 42

Conread position: 1-562
Cow position: chr9:9958218-9957639 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 208

Conread position: 1-562
Cow position: chr9:18109669-18110253 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 251

Conread position: 1-562
Cow position: chr9:30401251-30401827 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 92

Conread position: 1-562
Cow position: chr9:42570182-42570769 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-562
Cow position: chr9:56862189-56861628 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 34

Conread position: 1-562
Cow position: chr9:62131006-62131581 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 93

Conread position: 1-563
Cow position: chr9:28702418-28703004 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 116

Conread position: 1-569
Cow position: chr9:6707950-6707356 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 1-569
Cow position: chr9:16178555-16179146 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 180

Conread position: 1-570
Cow position: chr9:174805-174212 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-570
Cow position: chr9:777846-777248 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-570
Cow position: chr9:1062727-1062133 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 122

Conread position: 1-570
Cow position: chr9:1071316-1070721 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-570
Cow position: chr9:5430435-5431029 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 65

Conread position: 1-570
Cow position: chr9:7104263-7103668 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-570
Cow position: chr9:26325714-26326308 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 286

Conread position: 1-570
Cow position: chr9:30675043-30675637 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 257

Conread position: 1-570
Cow position: chr9:31417547-31416953 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 25

Conread position: 1-570
Cow position: chr9:37174437-37173842 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 1-570
Cow position: chr9:39303585-39302990 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-570
Cow position: chr9:50840401-50841009 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 51

Conread position: 1-570
Cow position: chr9:64012261-64011667 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 1-571
Cow position: chr9:1099562-1100148 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 482

Conread position: 1-571
Cow position: chr9:1837923-1838515 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 315

Conread position: 1-571
Cow position: chr9:2208700-2208109 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 25

Conread position: 1-571
Cow position: chr9:2856812-2857407 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-571
Cow position: chr9:3061559-3062151 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 41

Conread position: 1-571
Cow position: chr9:3756863-3756284 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 226

Conread position: 1-571
Cow position: chr9:4940531-4939930 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 367

Conread position: 1-571
Cow position: chr9:6252536-6253128 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 189

Conread position: 1-571
Cow position: chr9:7005709-7006303 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 499

Conread position: 1-571
Cow position: chr9:7059082-7058491 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 477

Conread position: 1-571
Cow position: chr9:12285739-12285143 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 133

Conread position: 1-571
Cow position: chr9:14045641-14046226 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 85

Conread position: 1-571
Cow position: chr9:17061389-17060794 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 176

Conread position: 1-571
Cow position: chr9:21412280-21412865 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 145

Conread position: 1-571
Cow position: chr9:22570073-22570668 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 181

Conread position: 1-571
Cow position: chr9:27781944-27781348 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 482

Conread position: 1-571
Cow position: chr9:28024787-28025384 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-571
Cow position: chr9:31810545-31811141 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 318

Conread position: 1-571
Cow position: chr9:32972335-32972929 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 267

Conread position: 1-571
Cow position: chr9:33843292-33843887 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 33

Conread position: 1-571
Cow position: chr9:34059665-34059069 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-571
Cow position: chr9:34238791-34238191 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 293

Conread position: 1-571
Cow position: chr9:44203112-44202516 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 1-571
Cow position: chr9:46627279-46627874 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 293

Conread position: 1-571
Cow position: chr9:54413640-54413055 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 74

Conread position: 1-571
Cow position: chr9:59479880-59479294 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 202

Conread position: 1-572
Cow position: chr9:791349-790749 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 450

Conread position: 1-573
Cow position: chr9:1939065-1938478 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 148

Conread position: 1-573
Cow position: chr9:5006941-5007531 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 349

Conread position: 1-573
Cow position: chr9:5452672-5452074 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-573
Cow position: chr9:17017722-17018320 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-573
Cow position: chr9:18071452-18072046 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 119

Conread position: 1-573
Cow position: chr9:29193600-29193008 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 173

Conread position: 1-573
Cow position: chr9:33068523-33067928 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 76

Conread position: 1-573
Cow position: chr9:37253372-37253970 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-573
Cow position: chr9:43496102-43496700 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-573
Cow position: chr9:52002138-52001537 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 10

Conread position: 1-577
Cow position: chr9:1519560-1520151 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 92

Conread position: 1-577
Cow position: chr9:1640223-1640837 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 319

Conread position: 1-577
Cow position: chr9:3217370-3216769 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 454

Conread position: 1-577
Cow position: chr9:3388833-3388258 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 64

Conread position: 3-577
Cow position: chr9:47263001-47263603 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 120

Conread position: 4-263
Cow position: chr9:2484646-2484381 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 4-336
Cow position: chr9:26280811-26281151 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 226
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 92, 216

Conread position: 4-339
Cow position: chr9:55797132-55796788 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 241
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 77, 31

Conread position: 4-393
Cow position: chr9:62444004-62443609 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 203

Conread position: 4-495
Cow position: chr9:4306104-4305594 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 344
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 103, 89

Conread position: 4-524
Cow position: chr9:6329421-6328899 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 22

Conread position: 4-540
Cow position: chr9:9491970-9491421 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 58

Conread position: 4-558
Cow position: chr9:2548724-2548146 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 263

Conread position: 4-559
Cow position: chr9:50775677-50776239 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 367
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 102, 166

Conread position: 4-562
Cow position: chr9:17633451-17634040 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 4-570
Cow position: chr9:59496212-59495621 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 483

Conread position: 4-571
Cow position: chr9:5627790-5628382 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 4-571
Cow position: chr9:24918317-24917725 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 568

Conread position: 4-571
Cow position: chr9:59196828-59197411 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 89

Conread position: 4-577
Cow position: chr9:1404782-1405361 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 41

Conread position: 5-331
Cow position: chr9:22319444-22319106 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 276

Conread position: 5-339
Cow position: chr9:46525233-46524901 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 82

Conread position: 5-406
Cow position: chr9:13220515-13220929 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 47

Conread position: 5-432
Cow position: chr9:53776671-53777114 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 99

Conread position: 5-495
Cow position: chr9:4127968-4127483 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 44

Conread position: 5-557
Cow position: chr9:26555081-26555608 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 382
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 52, 88

Conread position: 5-562
Cow position: chr9:40623-40047 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 40

Conread position: 5-562
Cow position: chr9:29337875-29338452 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 26

Conread position: 5-571
Cow position: chr9:10567394-10566801 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 251

Conread position: 5-571
Cow position: chr9:13180893-13181473 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 89

Conread position: 5-572
Cow position: chr9:62669583-62668988 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 160

Conread position: 5-573
Cow position: chr9:61740065-61739489 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 99

Conread position: 5-577
Cow position: chr9:23526732-23527298 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 18

Conread position: 6-558
Cow position: chr9:44580251-44579676 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 348

Conread position: 6-562
Cow position: chr9:7458752-7458172 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 295

Conread position: 6-571
Cow position: chr9:19156319-19155721 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 7-317
Cow position: chr9:42216330-42216650 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 223
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 100, 156

Conread position: 8-571
Cow position: chr9:54995615-54996187 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 121

Conread position: 9-280
Cow position: chr9:14003013-14003288 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 229

Conread position: 9-280
Cow position: chr9:17588109-17588396 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 9-444
Cow position: chr9:41313065-41312606 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 9-535
Cow position: chr9:13472587-13472059 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 166

Conread position: 9-558
Cow position: chr9:6365353-6365922 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 422

Conread position: 9-562
Cow position: chr9:42868893-42868319 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 51

Conread position: 9-562
Cow position: chr9:42902464-42901896 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 264

Conread position: 9-568
Cow position: chr9:47005718-47006294 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 194

Conread position: 9-571
Cow position: chr9:1991576-1990990 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 9-571
Cow position: chr9:28681176-28681764 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 9-571
Cow position: chr9:38633756-38634343 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 9-571
Cow position: chr9:47171028-47171617 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 9-571
Cow position: chr9:48795316-48794728 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 9-571
Cow position: chr9:55031490-55032066 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 85

Conread position: 9-573
Cow position: chr9:5328375-5327800 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 84

Conread position: 9-573
Cow position: chr9:28785320-28785908 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 268

Conread position: 9-577
Cow position: chr9:8952057-8951485 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 213

Conread position: 9-577
Cow position: chr9:20941448-20942047 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 10-280
Cow position: chr9:2677246-2676972 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 42

Conread position: 10-562
Cow position: chr9:31061672-31062230 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 361
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 149, 100

Conread position: 10-571
Cow position: chr9:47044924-47045511 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 11-571
Cow position: chr9:19545489-19546082 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 171

Conread position: 12-571
Cow position: chr9:22655790-22656362 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 178

Conread position: 12-573
Cow position: chr9:26100479-26099923 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 360
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 162, 70

Conread position: 12-577
Cow position: chr9:34946035-34945455 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 403

Conread position: 13-554
Cow position: chr9:13492733-13493273 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 154

Conread position: 14-284
Cow position: chr9:17301145-17300867 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 92, 235

Conread position: 14-553
Cow position: chr9:9327094-9326557 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 203

Conread position: 14-571
Cow position: chr9:2835019-2834437 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 17-570
Cow position: chr9:50326681-50327259 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 117

Conread position: 17-577
Cow position: chr9:23421570-23422165 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 274

Conread position: 18-573
Cow position: chr9:4673047-4673621 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 86

Conread position: 25-267
Cow position: chr9:44920229-44920481 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 80, 92

Conread position: 26-573
Cow position: chr9:20988292-20988859 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 137

Conread position: 26-573
Cow position: chr9:30439391-30439951 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 97

Conread position: 26-577
Cow position: chr9:3960189-3959632 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 33

Conread position: 28-570
Cow position: chr9:60409396-60409965 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 29-504
Cow position: chr9:8282272-8281779 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 145

Conread position: 29-529
Cow position: chr9:22803656-22803132 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 291

Conread position: 29-573
Cow position: chr9:62818225-62817655 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 30-577
Cow position: chr9:23029020-23028466 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 75

Conread position: 32-571
Cow position: chr9:3997761-3997209 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 190

Conread position: 32-571
Cow position: chr9:15052883-15052335 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 66

Conread position: 34-573
Cow position: chr9:43494049-43494614 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 35-319
Cow position: chr9:4191283-4191577 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 71, 283

Conread position: 40-331
Cow position: chr9:388412-388716 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 206
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 67, 88

Conread position: 40-562
Cow position: chr9:34567655-34568190 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 120

Conread position: 40-571
Cow position: chr9:5887384-5886835 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 312

Conread position: 40-577
Cow position: chr9:3411886-3411330 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 28

Conread position: 44-570
Cow position: chr9:18710504-18711055 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 209

Conread position: 51-570
Cow position: chr9:3052284-3052827 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 8

Conread position: 51-573
Cow position: chr9:35624334-35624880 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 19

Conread position: 52-277
Cow position: chr9:15802418-15802655 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 54, 0

Conread position: 52-573
Cow position: chr9:34917638-34918171 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 290

Conread position: 57-577
Cow position: chr9:23540356-23540866 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 41

Conread position: 58-570
Cow position: chr9:36830027-36829489 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 65-286
Cow position: chr9:50003755-50003989 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 41, 0

Conread position: 65-573
Cow position: chr9:3933080-3932546 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 245

Conread position: 66-569
Cow position: chr9:35565507-35564977 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 66-572
Cow position: chr9:2222702-2223212 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 339
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 127, 38

Conread position: 71-573
Cow position: chr9:59540487-59540992 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 60

Conread position: 74-330
Cow position: chr9:33056824-33057091 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 32, 64

Conread position: 76-531
Cow position: chr9:63563457-63563941 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 433

Conread position: 77-573
Cow position: chr9:772202-771683 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 69

Conread position: 78-465
Cow position: chr9:34688530-34688918 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 267
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 29, 96

Conread position: 79-570
Cow position: chr9:873703-874216 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 14

Conread position: 81-407
Cow position: chr9:1259480-1259833 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 239
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 85-552
Cow position: chr9:58747766-58747281 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 317
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 20, 98

Conread position: 86-549
Cow position: chr9:49981557-49982037 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 35

Conread position: 87-562
Cow position: chr9:1983429-1983911 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 59

Conread position: 87-571
Cow position: chr9:24996431-24996915 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 25

Conread position: 88-549
Cow position: chr9:53603644-53603167 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 112

Conread position: 94-577
Cow position: chr9:28774204-28773696 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 177

Conread position: 106-302
Cow position: chr9:34460527-34460322 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 88, 0

Conread position: 106-492
Cow position: chr9:25548078-25547657 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 291
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 85, 0

Conread position: 106-522
Cow position: chr9:24725676-24726077 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 178

Conread position: 106-570
Cow position: chr9:34690454-34689971 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 106-571
Cow position: chr9:1307276-1306786 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 375

Conread position: 106-571
Cow position: chr9:4552884-4553358 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 59

Conread position: 106-571
Cow position: chr9:64562287-64562757 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 51

Conread position: 106-577
Cow position: chr9:37168548-37169030 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 38

Conread position: 107-481
Cow position: chr9:8601812-8601436 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 194

Conread position: 107-528
Cow position: chr9:5059005-5058574 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 245

Conread position: 112-330
Cow position: chr9:44820968-44821193 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 70, 28

Conread position: 113-570
Cow position: chr9:49259423-49258945 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 27

Conread position: 114-570
Cow position: chr9:7830819-7830332 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 159

Conread position: 120-506
Cow position: chr9:59539002-59539398 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 277
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 74, 13

Conread position: 123-570
Cow position: chr9:40316229-40316687 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 169

Conread position: 125-529
Cow position: chr9:30737418-30736990 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 288
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 61, 56

Conread position: 128-576
Cow position: chr9:9515769-9516228 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 136

Conread position: 131-573
Cow position: chr9:46670032-46670486 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 144

Conread position: 134-570
Cow position: chr9:37907951-37908411 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 136-502
Cow position: chr9:15981809-15982195 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 363

Conread position: 136-570
Cow position: chr9:18243877-18243420 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 136-570
Cow position: chr9:24423628-24424085 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 138-574
Cow position: chr9:38547436-38546987 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 309
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 61, 19

Conread position: 140-562
Cow position: chr9:29105986-29106428 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 5

Conread position: 144-558
Cow position: chr9:22755810-22755390 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 295
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 47, 203

Conread position: 145-569
Cow position: chr9:43302486-43302042 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 151-558
Cow position: chr9:58674787-58674360 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 168

Conread position: 157-571
Cow position: chr9:47883156-47882722 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 158-570
Cow position: chr9:216883-216448 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 159-571
Cow position: chr9:12378577-12379009 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 162-573
Cow position: chr9:13620865-13620431 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 165-562
Cow position: chr9:6304570-6304989 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 168-548
Cow position: chr9:33999375-33999771 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 294

Conread position: 168-571
Cow position: chr9:62401183-62400745 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 297
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 30, 82

Conread position: 169-571
Cow position: chr9:50900497-50900086 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 180

Conread position: 171-562
Cow position: chr9:7844538-7844137 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 96

Conread position: 192-325
Cow position: chr9:17993186-17993050 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 192-558
Cow position: chr9:51556137-51556514 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 194-573
Cow position: chr9:18205247-18205625 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 85

Conread position: 201-562
Cow position: chr9:49073885-49073514 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 324

Conread position: 201-571
Cow position: chr9:10326406-10326797 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 205-577
Cow position: chr9:9633842-9634227 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 10

Conread position: 210-487
Cow position: chr9:62074919-62075200 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 20, 167

Conread position: 212-571
Cow position: chr9:10857223-10857595 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 45

Conread position: 212-573
Cow position: chr9:4862388-4862007 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 12

Conread position: 215-515
Cow position: chr9:20317614-20317927 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 216
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 15, 240

Conread position: 220-569
Cow position: chr9:59760834-59761177 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 122, 74

Conread position: 220-571
Cow position: chr9:27898229-27898590 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 115, 12

Conread position: 221-495
Cow position: chr9:8387019-8387306 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 198
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 8, 251

Conread position: 221-529
Cow position: chr9:31114854-31115175 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 229
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 114, 35

Conread position: 221-540
Cow position: chr9:64054645-64054966 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 36

Conread position: 221-547
Cow position: chr9:50689098-50689438 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 231
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 7, 310

Conread position: 221-562
Cow position: chr9:23859479-23859140 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 227
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 25, 118

Conread position: 222-571
Cow position: chr9:37194222-37193870 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 148

Conread position: 222-571
Cow position: chr9:59454697-59454335 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 223-494
Cow position: chr9:23044078-23043795 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 16, 71

Conread position: 223-562
Cow position: chr9:43670056-43670392 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 232
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 107, 166

Conread position: 223-577
Cow position: chr9:8727547-8727907 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 41

Conread position: 224-418
Cow position: chr9:64106337-64106150 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 179, 73

Conread position: 224-484
Cow position: chr9:5414848-5414579 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 182
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 113, 227

Conread position: 224-498
Cow position: chr9:18007800-18008089 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 194
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 106, 68

Conread position: 224-549
Cow position: chr9:5839931-5839599 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 236
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 88, 69

Conread position: 224-549
Cow position: chr9:17307011-17307347 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 241
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 116, 57

Conread position: 224-559
Cow position: chr9:10760370-10760702 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 60

Conread position: 224-562
Cow position: chr9:11478055-11477707 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 239
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 113, 37

Conread position: 224-562
Cow position: chr9:16981866-16981516 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 224-562
Cow position: chr9:52293679-52294032 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 256
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 103, 254

Conread position: 224-563
Cow position: chr9:5030728-5030378 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 224-570
Cow position: chr9:3058415-3058062 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 245
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 113, 8

Conread position: 224-570
Cow position: chr9:10802876-10803235 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 91

Conread position: 224-570
Cow position: chr9:16639477-16639837 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 0

Conread position: 224-570
Cow position: chr9:25701986-25701630 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 243
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 117, 0

Conread position: 224-570
Cow position: chr9:42053327-42052973 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 250
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 111, 317

Conread position: 224-570
Cow position: chr9:42475880-42475524 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 195

Conread position: 224-571
Cow position: chr9:2681691-2682052 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 251
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 71, 59

Conread position: 224-571
Cow position: chr9:30186909-30187269 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 48

Conread position: 224-573
Cow position: chr9:9611684-9611321 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 0

Conread position: 224-573
Cow position: chr9:22361948-22361595 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 57

Conread position: 224-573
Cow position: chr9:45383429-45383792 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 0

Conread position: 226-484
Cow position: chr9:9818048-9817780 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 196
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 101, 115

Conread position: 227-552
Cow position: chr9:10665109-10665447 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 37

Conread position: 228-525
Cow position: chr9:58133396-58133079 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 114, 0

Conread position: 230-573
Cow position: chr9:9442659-9443016 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 234-562
Cow position: chr9:47545862-47546196 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 228
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 19, 38

Conread position: 234-571
Cow position: chr9:33659407-33659062 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 281

Conread position: 236-501
Cow position: chr9:11410417-11410690 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 104, 182

Conread position: 240-559
Cow position: chr9:20959014-20959345 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 236
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 101, 219

Conread position: 241-571
Cow position: chr9:3311519-3311853 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 241
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 94, 38

Conread position: 241-573
Cow position: chr9:3717583-3717929 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 242-571
Cow position: chr9:35592920-35592575 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 277

Conread position: 244-577
Cow position: chr9:30020925-30021266 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 80

Conread position: 246-573
Cow position: chr9:60590015-60590348 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 234
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 101, 152

Conread position: 248-550
Cow position: chr9:11338014-11337699 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 203
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 257-562
Cow position: chr9:11156429-11156117 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 283

Conread position: 258-514
Cow position: chr9:28725836-28726104 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 180
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 84, 0

Conread position: 259-495
Cow position: chr9:38346915-38346672 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 82, 0

Conread position: 261-550
Cow position: chr9:44107312-44107599 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 101

Conread position: 266-552
Cow position: chr9:56528462-56528758 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 205
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 65, 270

Conread position: 270-562
Cow position: chr9:1516626-1516935 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 209
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 192

Conread position: 309-577
Cow position: chr9:59507929-59507649 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 34, 0

Conread position: 371-553
Cow position: chr9:35808451-35808273 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 83, 0

Conread position: 393-573
Cow position: chr9:29329898-29330077 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 15, 27

Show alignments to all cow chromosomes.