Cow genome map

Conread name: rpigcb_12369.y1

Conread position: 1-266
Cow position: chr1:61725213-61725478 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 12

Conread position: 1-316
Cow position: chr1:11226345-11226661 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 125

Conread position: 1-316
Cow position: chr1:21092989-21092675 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 31

Conread position: 1-316
Cow position: chr1:88970955-88970662 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 68, 31

Conread position: 2-176
Cow position: chr1:84786670-84786495 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 140
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 64, 124

Conread position: 2-316
Cow position: chr1:2317741-2318055 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 139

Conread position: 2-316
Cow position: chr1:4027083-4026771 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 108

Conread position: 2-316
Cow position: chr1:41181741-41181425 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 65

Conread position: 3-136
Cow position: chr1:65638103-65637968 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 3-148
Cow position: chr1:93528589-93528442 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 3-154
Cow position: chr1:96712919-96713068 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 60, 0

Conread position: 3-157
Cow position: chr1:24655856-24655703 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 43, 62

Conread position: 3-205
Cow position: chr1:71257584-71257788 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 63, 0

Conread position: 3-211
Cow position: chr1:60910243-60910034 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 63, 80

Conread position: 3-266
Cow position: chr1:12222710-12222970 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 3-308
Cow position: chr1:65943071-65943369 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 267, 63

Conread position: 3-308
Cow position: chr1:90836105-90836401 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 64, 163

Conread position: 3-312
Cow position: chr1:1802034-1801735 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 58, 0

Conread position: 3-313
Cow position: chr1:46885993-46885679 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 255

Conread position: 3-314
Cow position: chr1:54199489-54199795 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 61

Conread position: 3-315
Cow position: chr1:54258458-54258156 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 52

Conread position: 3-315
Cow position: chr1:101551356-101551034 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 3-316
Cow position: chr1:2169624-2169942 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 31

Conread position: 3-316
Cow position: chr1:8601819-8602134 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 254

Conread position: 3-316
Cow position: chr1:11853791-11854107 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 253

Conread position: 3-316
Cow position: chr1:12213588-12213904 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 220
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr1:13250388-13250704 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr1:25177845-25178161 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr1:30034433-30034134 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 31

Conread position: 3-316
Cow position: chr1:30373047-30372735 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 61

Conread position: 3-316
Cow position: chr1:31720386-31720071 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 205

Conread position: 3-316
Cow position: chr1:32562379-32562695 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr1:33547240-33547556 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr1:35769343-35769028 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 102

Conread position: 3-316
Cow position: chr1:40604183-40603869 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 89

Conread position: 3-316
Cow position: chr1:45007364-45007053 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 56

Conread position: 3-316
Cow position: chr1:50670975-50670659 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr1:52354516-52354831 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 243

Conread position: 3-316
Cow position: chr1:56190259-56190575 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr1:57077203-57076885 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 213
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 107, 62

Conread position: 3-316
Cow position: chr1:57362173-57362489 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 225
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 226, 64

Conread position: 3-316
Cow position: chr1:58419831-58419508 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 222
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 63, 254

Conread position: 3-316
Cow position: chr1:63601646-63601944 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 226
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 267, 60

Conread position: 3-316
Cow position: chr1:65390721-65390405 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 252

Conread position: 3-316
Cow position: chr1:67577963-67577660 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 230
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 66, 29

Conread position: 3-316
Cow position: chr1:68717084-68717397 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 171

Conread position: 3-316
Cow position: chr1:73442723-73443040 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 43

Conread position: 3-316
Cow position: chr1:76617343-76617645 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 210
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 66, 137

Conread position: 3-316
Cow position: chr1:85776302-85776618 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr1:97075338-97075654 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 129

Conread position: 3-316
Cow position: chr1:99837190-99837503 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 50

Conread position: 4-192
Cow position: chr1:91142261-91142447 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 151
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 62, 28

Conread position: 4-306
Cow position: chr1:24570997-24571284 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 55

Conread position: 4-316
Cow position: chr1:4374447-4374755 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 19

Conread position: 9-316
Cow position: chr1:61070896-61070596 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 220
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 33, 208

Conread position: 9-316
Cow position: chr1:88029174-88028874 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 115

Conread position: 10-144
Cow position: chr1:51445767-51445635 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 10-311
Cow position: chr1:17286519-17286823 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 207
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 57, 0

Conread position: 10-313
Cow position: chr1:50357820-50358125 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 210
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 57, 199

Conread position: 10-313
Cow position: chr1:99398769-99398463 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 52, 246

Conread position: 10-315
Cow position: chr1:9376228-9376535 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 57, 117

Conread position: 10-316
Cow position: chr1:8402624-8402315 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 57, 0

Conread position: 10-316
Cow position: chr1:13404235-13404541 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 215
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 57, 164

Conread position: 10-316
Cow position: chr1:17008587-17008897 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 207
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 54, 0

Conread position: 10-316
Cow position: chr1:49269033-49268724 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 57, 0

Conread position: 10-316
Cow position: chr1:66368242-66368551 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 209
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 57, 0

Conread position: 10-316
Cow position: chr1:81859339-81859635 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 22

Conread position: 10-316
Cow position: chr1:86543811-86544120 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 59, 0

Conread position: 11-313
Cow position: chr1:31817018-31817323 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 209
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 56, 0

Conread position: 12-154
Cow position: chr1:37322116-37322260 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 50, 68

Conread position: 12-163
Cow position: chr1:52488077-52488221 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 12-179
Cow position: chr1:40599929-40599773 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 12-201
Cow position: chr1:33811815-33811633 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 32, 0

Conread position: 12-218
Cow position: chr1:41056569-41056366 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 164
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 51, 0

Conread position: 12-227
Cow position: chr1:57900853-57901064 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 60, 51

Conread position: 12-233
Cow position: chr1:95215296-95215509 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 178
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 24, 19

Conread position: 12-241
Cow position: chr1:98563049-98562819 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 84

Conread position: 12-266
Cow position: chr1:35844045-35844291 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 22, 0

Conread position: 12-289
Cow position: chr1:68276296-68276018 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 115

Conread position: 12-307
Cow position: chr1:96928375-96928672 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 165

Conread position: 12-308
Cow position: chr1:71691704-71691405 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 19

Conread position: 12-311
Cow position: chr1:64062226-64061924 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 207
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 55, 0

Conread position: 12-314
Cow position: chr1:36645302-36645606 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 37

Conread position: 12-314
Cow position: chr1:79844352-79844054 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 40

Conread position: 12-314
Cow position: chr1:81355820-81356118 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 20

Conread position: 12-314
Cow position: chr1:88338585-88338274 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 114

Conread position: 12-315
Cow position: chr1:84812047-84812366 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 229
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 57, 260

Conread position: 12-316
Cow position: chr1:3381764-3382071 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 12-316
Cow position: chr1:3929973-3930276 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 51

Conread position: 12-316
Cow position: chr1:6200459-6200152 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 246

Conread position: 12-316
Cow position: chr1:10070957-10071264 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 246

Conread position: 12-316
Cow position: chr1:10778452-10778157 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 20

Conread position: 12-316
Cow position: chr1:21376415-21376719 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 55, 21

Conread position: 12-316
Cow position: chr1:22728937-22728632 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 150

Conread position: 12-316
Cow position: chr1:30530886-30531190 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 12-316
Cow position: chr1:33717111-33716804 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 19

Conread position: 12-316
Cow position: chr1:39835203-39834883 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 219
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 57, 0

Conread position: 12-316
Cow position: chr1:40062338-40062029 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 12-316
Cow position: chr1:41696944-41696644 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 113

Conread position: 12-316
Cow position: chr1:42360157-42359850 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 172

Conread position: 12-316
Cow position: chr1:61005676-61005977 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 153

Conread position: 12-316
Cow position: chr1:62711037-62711346 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 216
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 55, 248

Conread position: 12-316
Cow position: chr1:63049710-63049409 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 40

Conread position: 12-316
Cow position: chr1:71666288-71666592 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 210
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 55, 162

Conread position: 12-316
Cow position: chr1:72813297-72812999 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 37

Conread position: 12-316
Cow position: chr1:73995579-73995273 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 213
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 55, 174

Conread position: 12-316
Cow position: chr1:76420006-76419699 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 246

Conread position: 12-316
Cow position: chr1:77553041-77553349 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 206
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 54, 0

Conread position: 12-316
Cow position: chr1:83185137-83184836 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 90

Conread position: 12-316
Cow position: chr1:88298356-88298053 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 208
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 57, 120

Conread position: 12-316
Cow position: chr1:89185294-89185614 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 221
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 10, 0

Conread position: 12-316
Cow position: chr1:91799102-91799402 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 215
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 254, 58

Conread position: 12-316
Cow position: chr1:96488069-96487763 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 211
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 55, 192

Conread position: 12-316
Cow position: chr1:99642480-99642776 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 19

Conread position: 12-316
Cow position: chr1:101973058-101973367 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 249

Conread position: 13-260
Cow position: chr1:42256619-42256870 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 13-316
Cow position: chr1:65907368-65907663 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 215
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 255, 36

Conread position: 13-316
Cow position: chr1:89344794-89344494 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 13-316
Cow position: chr1:91888098-91888404 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 245

Conread position: 13-316
Cow position: chr1:97284489-97284792 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 91

Conread position: 14-308
Cow position: chr1:102010133-102010428 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 210
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 53, 10

Conread position: 14-313
Cow position: chr1:101776552-101776252 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 216
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 52, 156

Conread position: 14-316
Cow position: chr1:15311753-15311449 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 20

Conread position: 14-316
Cow position: chr1:63390890-63391189 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 17

Conread position: 14-316
Cow position: chr1:77620435-77620129 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 62

Conread position: 14-316
Cow position: chr1:81228456-81228746 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 18

Conread position: 16-316
Cow position: chr1:95176821-95176518 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 243

Conread position: 17-316
Cow position: chr1:11873479-11873771 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 18-306
Cow position: chr1:82958173-82958462 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 90, 52

Conread position: 18-316
Cow position: chr1:63260364-63260655 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 212
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 58, 47

Conread position: 19-312
Cow position: chr1:39913141-39913435 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 55, 178

Conread position: 19-316
Cow position: chr1:28877239-28876939 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-316
Cow position: chr1:88983275-88983564 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 46

Conread position: 21-308
Cow position: chr1:85339008-85338720 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 10

Conread position: 21-316
Cow position: chr1:82920002-82920297 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 210
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 46, 148

Conread position: 25-316
Cow position: chr1:53579189-53578896 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 27-316
Cow position: chr1:22220985-22221274 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 40, 90

Conread position: 30-316
Cow position: chr1:94226677-94226965 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 24

Conread position: 32-316
Cow position: chr1:42053454-42053740 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 221

Conread position: 34-316
Cow position: chr1:82880532-82880254 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 72

Conread position: 35-315
Cow position: chr1:38418942-38418662 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 138

Conread position: 35-316
Cow position: chr1:2055007-2055289 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 81, 29

Conread position: 35-316
Cow position: chr1:57639654-57639918 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 32, 92

Conread position: 38-308
Cow position: chr1:46693793-46694065 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 66

Conread position: 40-313
Cow position: chr1:76494878-76495155 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 195
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 181, 29

Conread position: 43-316
Cow position: chr1:72105001-72104730 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 21

Conread position: 45-316
Cow position: chr1:5289316-5289045 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 19

Conread position: 48-316
Cow position: chr1:102289343-102289612 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 88

Conread position: 52-315
Cow position: chr1:101822648-101822912 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 81

Conread position: 55-316
Cow position: chr1:8129857-8130116 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 6, 71

Conread position: 66-316
Cow position: chr1:76019848-76020097 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 55

Conread position: 66-316
Cow position: chr1:100816375-100816126 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 64

Conread position: 67-304
Cow position: chr1:2075495-2075732 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 182, 109

Conread position: 67-316
Cow position: chr1:71797067-71797312 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 75-316
Cow position: chr1:55429159-55429400 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 110

Conread position: 77-316
Cow position: chr1:42741105-42740866 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 152
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 190, 66

Conread position: 82-316
Cow position: chr1:90235134-90235361 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 192, 83

Conread position: 82-316
Cow position: chr1:96184190-96184425 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 177, 0

Conread position: 83-316
Cow position: chr1:68445978-68446215 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 80, 114

Conread position: 85-312
Cow position: chr1:31535930-31535699 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 112, 176

Conread position: 85-316
Cow position: chr1:102321041-102321272 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 184, 145

Conread position: 106-306
Cow position: chr1:24561711-24561899 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 160, 19

Conread position: 110-316
Cow position: chr1:57155870-57156084 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 114, 154

Conread position: 114-315
Cow position: chr1:75250021-75249820 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 156, 50

Conread position: 118-316
Cow position: chr1:53703878-53704087 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 120-316
Cow position: chr1:72987496-72987299 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 155
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 147, 136

Conread position: 121-316
Cow position: chr1:362694-362499 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 149, 101

Conread position: 121-316
Cow position: chr1:94465147-94464954 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 143, 67

Conread position: 124-316
Cow position: chr1:24581415-24581224 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 145, 35

Conread position: 125-316
Cow position: chr1:83594001-83594193 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 141, 132

Conread position: 132-308
Cow position: chr1:100436673-100436497 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 136, 72

Conread position: 134-316
Cow position: chr1:102743899-102743717 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 123, 17

Conread position: 138-312
Cow position: chr1:25185797-25185972 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 130, 118

Conread position: 138-316
Cow position: chr1:15143867-15144046 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 129, 118

Conread position: 138-316
Cow position: chr1:15145678-15145857 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 129, 118

Conread position: 140-313
Cow position: chr1:5178102-5178277 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 123, 0

Conread position: 140-316
Cow position: chr1:4337777-4337601 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 130, 90

Conread position: 140-316
Cow position: chr1:32355056-32355232 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 129, 28

Conread position: 141-316
Cow position: chr1:86114519-86114343 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 128, 116

Conread position: 142-316
Cow position: chr1:95071466-95071289 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 90, 117

Conread position: 143-315
Cow position: chr1:25282182-25282355 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 126, 113

Conread position: 143-316
Cow position: chr1:81363282-81363116 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 33

Conread position: 144-311
Cow position: chr1:93536498-93536332 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 105, 0

Conread position: 145-316
Cow position: chr1:1829552-1829724 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 127, 112

Conread position: 146-316
Cow position: chr1:2070083-2070255 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 106, 117

Conread position: 146-316
Cow position: chr1:19883594-19883764 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 55, 111

Conread position: 146-316
Cow position: chr1:22011948-22012121 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 73, 112

Conread position: 147-316
Cow position: chr1:85163079-85163249 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 120, 110

Conread position: 150-308
Cow position: chr1:10881528-10881370 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 114, 45

Conread position: 150-315
Cow position: chr1:82338061-82338233 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 107, 0

Conread position: 152-315
Cow position: chr1:78795005-78795169 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 117, 105

Conread position: 154-313
Cow position: chr1:22615915-22616075 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 112, 30

Conread position: 154-316
Cow position: chr1:52955962-52955803 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 116, 18

Conread position: 154-316
Cow position: chr1:74085810-74085970 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 115, 0

Conread position: 155-316
Cow position: chr1:34856961-34857123 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 94, 120

Conread position: 157-316
Cow position: chr1:523013-522857 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 45

Conread position: 157-316
Cow position: chr1:10519498-10519338 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 112, 100

Conread position: 157-316
Cow position: chr1:38712721-38712557 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 54, 103

Conread position: 161-306
Cow position: chr1:31646430-31646576 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 120
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 105, 96

Conread position: 161-316
Cow position: chr1:22836115-22835959 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 109, 96

Conread position: 162-315
Cow position: chr1:61747422-61747575 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 107, 94

Conread position: 162-316
Cow position: chr1:71818763-71818924 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 86, 0

Conread position: 163-316
Cow position: chr1:61283406-61283245 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 164-316
Cow position: chr1:8829019-8828864 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 109, 92

Conread position: 164-316
Cow position: chr1:29901250-29901403 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 104, 93

Conread position: 165-316
Cow position: chr1:84786091-84786242 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 101, 77

Conread position: 167-305
Cow position: chr1:48605906-48605767 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 99, 90

Conread position: 170-316
Cow position: chr1:12804680-12804537 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 170-316
Cow position: chr1:53369700-53369556 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 32, 88

Show alignments to all cow chromosomes.