Cow genome map

Conread name: rpigcb_12369.y1

Conread position: 1-313
Cow position: chr19:19499675-19499984 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 25

Conread position: 1-316
Cow position: chr19:56150190-56150492 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 229
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 265, 62

Conread position: 3-139
Cow position: chr19:55590114-55589975 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 28

Conread position: 3-149
Cow position: chr19:19431106-19430964 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 42

Conread position: 3-155
Cow position: chr19:21335735-21335885 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 63, 121

Conread position: 3-306
Cow position: chr19:51401130-51401435 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 29

Conread position: 3-308
Cow position: chr19:39181330-39181634 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 214
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 52, 62

Conread position: 3-312
Cow position: chr19:736799-736487 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 214
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 66, 44

Conread position: 3-313
Cow position: chr19:176704-176391 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-313
Cow position: chr19:27087689-27087374 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 59, 207

Conread position: 3-316
Cow position: chr19:4460534-4460846 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 22

Conread position: 3-316
Cow position: chr19:8128195-8127882 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 29

Conread position: 3-316
Cow position: chr19:12653087-12652772 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 129

Conread position: 3-316
Cow position: chr19:14158825-14158509 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr19:15797849-15797533 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr19:31825136-31825466 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 233
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 62, 35

Conread position: 3-316
Cow position: chr19:33306977-33306665 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 124

Conread position: 3-316
Cow position: chr19:34905114-34905428 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 234

Conread position: 3-316
Cow position: chr19:35310768-35311072 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 212
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 113, 68

Conread position: 3-316
Cow position: chr19:38842678-38842979 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 232
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 64, 28

Conread position: 3-316
Cow position: chr19:39245776-39245483 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 3-316
Cow position: chr19:39395921-39395611 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 61

Conread position: 3-316
Cow position: chr19:39649384-39649717 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 66, 52

Conread position: 3-316
Cow position: chr19:41673365-41673677 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 49

Conread position: 3-316
Cow position: chr19:48557132-48556812 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 217
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 16, 36

Conread position: 4-176
Cow position: chr19:47118619-47118790 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 140
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 62, 122

Conread position: 4-252
Cow position: chr19:12712000-12712250 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 185
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 65, 171

Conread position: 5-180
Cow position: chr19:4252095-4252270 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 26

Conread position: 9-153
Cow position: chr19:53791555-53791701 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 10-214
Cow position: chr19:30533815-30533610 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 161
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 56, 116

Conread position: 10-219
Cow position: chr19:46454724-46454512 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 56, 98

Conread position: 10-304
Cow position: chr19:24005251-24004957 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 57, 22

Conread position: 10-316
Cow position: chr19:5887195-5887504 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 213
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 57, 0

Conread position: 10-316
Cow position: chr19:27080985-27081294 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 211
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 57, 248

Conread position: 10-316
Cow position: chr19:33304493-33304184 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 56, 0

Conread position: 11-316
Cow position: chr19:31873981-31873672 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 38

Conread position: 12-154
Cow position: chr19:33823185-33823045 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 12-158
Cow position: chr19:33293740-33293888 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 49, 117

Conread position: 12-179
Cow position: chr19:24935946-24936113 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 143, 51

Conread position: 12-219
Cow position: chr19:33448065-33448258 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 12-259
Cow position: chr19:37633480-37633728 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 238

Conread position: 12-312
Cow position: chr19:3834172-3833875 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 53

Conread position: 12-312
Cow position: chr19:54006786-54006485 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 52

Conread position: 12-313
Cow position: chr19:52456889-52457182 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 202
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 55, 139

Conread position: 12-314
Cow position: chr19:39751353-39751044 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 141

Conread position: 12-314
Cow position: chr19:55930303-55930600 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 199
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 54, 129

Conread position: 12-315
Cow position: chr19:32450950-32450630 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 221
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 54, 0

Conread position: 12-316
Cow position: chr19:4389982-4389677 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 40

Conread position: 12-316
Cow position: chr19:4445752-4446052 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 19

Conread position: 12-316
Cow position: chr19:17795765-17795460 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 32

Conread position: 12-316
Cow position: chr19:20661544-20661850 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 88

Conread position: 12-316
Cow position: chr19:23222504-23222209 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 20

Conread position: 12-316
Cow position: chr19:25041459-25041765 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 52

Conread position: 12-316
Cow position: chr19:34971225-34970919 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 212
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 55, 247

Conread position: 12-316
Cow position: chr19:35287866-35288169 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 55, 159

Conread position: 12-316
Cow position: chr19:36722192-36721900 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 213
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 257, 52

Conread position: 12-316
Cow position: chr19:37843596-37843886 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 52, 0

Conread position: 12-316
Cow position: chr19:39057112-39056810 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 40

Conread position: 12-316
Cow position: chr19:43441034-43440734 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 221
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 55, 24

Conread position: 12-316
Cow position: chr19:54984937-54984641 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 40

Conread position: 12-316
Cow position: chr19:55967823-55968122 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 208
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 254, 57

Conread position: 13-307
Cow position: chr19:36125455-36125162 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 126

Conread position: 13-309
Cow position: chr19:22765488-22765190 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 18

Conread position: 13-315
Cow position: chr19:4448400-4448107 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 50

Conread position: 13-316
Cow position: chr19:2821449-2821137 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 216
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 27, 19

Conread position: 13-316
Cow position: chr19:33945742-33945436 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 245

Conread position: 13-316
Cow position: chr19:39697938-39697638 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 52

Conread position: 13-316
Cow position: chr19:43054308-43054004 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 203
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 54, 177

Conread position: 14-193
Cow position: chr19:35742028-35741846 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 147
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 51, 0

Conread position: 17-306
Cow position: chr19:44215444-44215725 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 52, 26

Conread position: 18-316
Cow position: chr19:2266969-2267268 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 206
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 240

Conread position: 19-316
Cow position: chr19:52214949-52214658 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 210
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 251, 45

Conread position: 20-316
Cow position: chr19:48534915-48534617 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 208
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 47, 150

Conread position: 21-315
Cow position: chr19:25086392-25086092 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 214
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 134, 30

Conread position: 22-316
Cow position: chr19:12471438-12471736 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 208
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 45, 0

Conread position: 22-316
Cow position: chr19:31728288-31727991 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 236

Conread position: 35-316
Cow position: chr19:9583160-9582871 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 127, 29

Conread position: 38-316
Cow position: chr19:33932296-33932578 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 41-316
Cow position: chr19:55422210-55421925 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 193
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 26, 0

Conread position: 42-316
Cow position: chr19:434034-434310 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 25, 90

Conread position: 44-316
Cow position: chr19:50047558-50047829 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 14

Conread position: 49-315
Cow position: chr19:10786524-10786792 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 161

Conread position: 49-316
Cow position: chr19:28793813-28794084 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 210

Conread position: 53-214
Cow position: chr19:12601641-12601480 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 66-312
Cow position: chr19:129716-129963 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 200, 191

Conread position: 75-316
Cow position: chr19:22779010-22778769 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 181
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 181, 107

Conread position: 75-316
Cow position: chr19:25168486-25168726 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 43

Conread position: 80-316
Cow position: chr19:33287052-33286818 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 186, 176

Conread position: 82-316
Cow position: chr19:41139604-41139840 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 0

Conread position: 90-316
Cow position: chr19:36221728-36221501 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 0

Conread position: 91-316
Cow position: chr19:19963832-19963598 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 136, 117

Conread position: 115-304
Cow position: chr19:10752708-10752898 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 150
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 154, 141

Conread position: 121-316
Cow position: chr19:2026870-2026667 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 33, 144

Conread position: 126-316
Cow position: chr19:5043616-5043807 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 150
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 141, 130

Conread position: 133-316
Cow position: chr19:55247192-55247012 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 48, 54

Conread position: 140-302
Cow position: chr19:55783693-55783534 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 140-316
Cow position: chr19:40790290-40790467 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 127, 116

Conread position: 145-315
Cow position: chr19:20433175-20433345 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 107, 6

Conread position: 148-316
Cow position: chr19:36844960-36844790 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 108, 0

Conread position: 152-316
Cow position: chr19:17319908-17319743 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 101, 0

Conread position: 152-316
Cow position: chr19:50832844-50833007 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 61, 91

Conread position: 163-315
Cow position: chr19:38638306-38638462 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 26, 97

Conread position: 164-316
Cow position: chr19:18016168-18016318 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 182-313
Cow position: chr19:44397027-44396894 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 87, 75

Show alignments to all cow chromosomes.