Cow genome map

Conread name: rpigcb_12369.y1

Conread position: 1-316
Cow position: chr23:3727506-3727820 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 126

Conread position: 2-201
Cow position: chr23:3247476-3247285 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 42, 0

Conread position: 2-314
Cow position: chr23:39573401-39573720 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 210
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 93, 62

Conread position: 3-149
Cow position: chr23:19979053-19979202 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 63, 0

Conread position: 3-152
Cow position: chr23:1803683-1803537 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 59, 119

Conread position: 3-155
Cow position: chr23:5617466-5617319 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 0

Conread position: 3-186
Cow position: chr23:5143706-5143891 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 63, 112

Conread position: 3-208
Cow position: chr23:587289-587083 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 62, 171

Conread position: 3-233
Cow position: chr23:37065731-37065503 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 158

Conread position: 3-286
Cow position: chr23:25883570-25883288 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 167

Conread position: 3-310
Cow position: chr23:21788877-21789187 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 269

Conread position: 3-311
Cow position: chr23:28120394-28120085 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 210
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 64, 25

Conread position: 3-313
Cow position: chr23:15702613-15702924 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 99

Conread position: 3-313
Cow position: chr23:16172553-16172240 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-313
Cow position: chr23:16383581-16383891 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 238

Conread position: 3-314
Cow position: chr23:17847200-17846896 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 213, 67

Conread position: 3-316
Cow position: chr23:1009511-1009821 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 31

Conread position: 3-316
Cow position: chr23:10852939-10852633 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 32

Conread position: 3-316
Cow position: chr23:11344597-11344282 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 52

Conread position: 3-316
Cow position: chr23:15529676-15529364 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 64, 156

Conread position: 3-316
Cow position: chr23:19493959-19493643 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr23:22804613-22804307 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 14

Conread position: 3-316
Cow position: chr23:27403234-27402924 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 64, 52

Conread position: 3-316
Cow position: chr23:29447153-29447464 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 218
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 203, 54

Conread position: 3-316
Cow position: chr23:30656285-30656584 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 222
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 83, 15

Conread position: 3-316
Cow position: chr23:36027150-36027462 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 49

Conread position: 3-316
Cow position: chr23:36129013-36129321 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 29

Conread position: 3-316
Cow position: chr23:37198224-37198537 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 64, 164

Conread position: 3-316
Cow position: chr23:39390158-39389842 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 255

Conread position: 3-316
Cow position: chr23:39740847-39741157 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 61

Conread position: 3-316
Cow position: chr23:40553035-40553351 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 105

Conread position: 3-316
Cow position: chr23:40825884-40825572 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 219
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 64, 112

Conread position: 4-316
Cow position: chr23:24505138-24504821 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 222
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 244, 101

Conread position: 4-316
Cow position: chr23:32309569-32309259 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 62

Conread position: 7-313
Cow position: chr23:9713001-9712694 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 33

Conread position: 10-316
Cow position: chr23:8308436-8308745 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 208
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 58, 0

Conread position: 10-316
Cow position: chr23:11129115-11128811 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 13

Conread position: 12-150
Cow position: chr23:21452850-21452988 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 54, 32

Conread position: 12-150
Cow position: chr23:26632684-26632545 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 54, 114

Conread position: 12-151
Cow position: chr23:6244702-6244843 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 12-154
Cow position: chr23:15287249-15287393 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 12-154
Cow position: chr23:29742270-29742125 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 19

Conread position: 12-166
Cow position: chr23:6359148-6359303 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 12-232
Cow position: chr23:39752999-39752777 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 54, 0

Conread position: 12-233
Cow position: chr23:29175866-29175651 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 172
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 54, 0

Conread position: 12-295
Cow position: chr23:1131990-1131704 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 54, 0

Conread position: 12-303
Cow position: chr23:5870301-5870596 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 19

Conread position: 12-308
Cow position: chr23:2501972-2502277 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 196
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 103, 33

Conread position: 12-312
Cow position: chr23:4636251-4636557 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 208
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 55, 0

Conread position: 12-312
Cow position: chr23:39793332-39793035 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 35

Conread position: 12-313
Cow position: chr23:25562242-25562545 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 120

Conread position: 12-314
Cow position: chr23:8698328-8698026 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 127

Conread position: 12-315
Cow position: chr23:5151873-5151558 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 54, 210

Conread position: 12-315
Cow position: chr23:9268474-9268168 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 114

Conread position: 12-316
Cow position: chr23:221950-221653 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 79, 11

Conread position: 12-316
Cow position: chr23:1429913-1430222 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 52

Conread position: 12-316
Cow position: chr23:1536205-1535900 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 23

Conread position: 12-316
Cow position: chr23:5623484-5623790 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 20

Conread position: 12-316
Cow position: chr23:8911355-8911057 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 37

Conread position: 12-316
Cow position: chr23:13511617-13511314 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 161

Conread position: 12-316
Cow position: chr23:14191434-14191129 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 115

Conread position: 12-316
Cow position: chr23:16609927-16610238 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 213
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 49, 17

Conread position: 12-316
Cow position: chr23:18796805-18797125 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 12-316
Cow position: chr23:26829332-26829033 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 45

Conread position: 12-316
Cow position: chr23:28306942-28306635 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 55, 246

Conread position: 12-316
Cow position: chr23:36309302-36308995 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 183, 35

Conread position: 12-316
Cow position: chr23:41285806-41285517 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 257, 45

Conread position: 12-316
Cow position: chr23:41472495-41472193 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 210
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 46, 115

Conread position: 13-266
Cow position: chr23:32961487-32961746 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 149, 113

Conread position: 13-313
Cow position: chr23:9223224-9222940 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 211
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 201, 19

Conread position: 13-313
Cow position: chr23:28916422-28916121 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 32

Conread position: 14-170
Cow position: chr23:3262617-3262774 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 52, 64

Conread position: 14-315
Cow position: chr23:7175499-7175202 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 17

Conread position: 16-152
Cow position: chr23:2259719-2259855 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 109

Conread position: 18-316
Cow position: chr23:7791042-7791335 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 251, 40

Conread position: 18-316
Cow position: chr23:20605399-20605720 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 235
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 48, 261

Conread position: 18-316
Cow position: chr23:39813320-39813031 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 207
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 144, 13

Conread position: 19-316
Cow position: chr23:24099215-24098916 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 48, 137

Conread position: 30-316
Cow position: chr23:18698159-18698449 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 19

Conread position: 41-315
Cow position: chr23:25669218-25669487 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 23

Conread position: 66-316
Cow position: chr23:26824819-26824570 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 164, 65

Conread position: 75-316
Cow position: chr23:7374694-7374460 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 147

Conread position: 82-316
Cow position: chr23:41220423-41220672 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 72, 186

Conread position: 84-316
Cow position: chr23:26797878-26798106 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 177
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 141, 0

Conread position: 94-316
Cow position: chr23:13520258-13520036 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 166, 57

Conread position: 111-316
Cow position: chr23:39028585-39028372 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 137, 0

Conread position: 119-316
Cow position: chr23:32007441-32007639 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 137, 125

Conread position: 131-316
Cow position: chr23:13409064-13408878 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 145
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 139, 125

Conread position: 138-313
Cow position: chr23:4100847-4100671 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 129, 118

Conread position: 138-316
Cow position: chr23:9806356-9806532 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 149, 34

Conread position: 139-316
Cow position: chr23:13648994-13649172 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 128, 117

Conread position: 140-316
Cow position: chr23:31609707-31609884 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 127, 116

Conread position: 147-308
Cow position: chr23:4005656-4005497 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 122, 25

Conread position: 154-316
Cow position: chr23:4741000-4741168 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 108

Conread position: 154-316
Cow position: chr23:8291411-8291248 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 106, 0

Conread position: 157-313
Cow position: chr23:3192418-3192569 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 113, 51

Conread position: 161-316
Cow position: chr23:26795482-26795639 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 127
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 108, 92

Conread position: 169-308
Cow position: chr23:2167453-2167593 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 101, 87

Show alignments to all cow chromosomes.