Cow genome map

Conread name: rpigcb_12369.y1

Conread position: 1-298
Cow position: chr24:19658419-19658115 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 1-312
Cow position: chr24:27754558-27754252 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 36

Conread position: 1-314
Cow position: chr24:3152714-3153031 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 229
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 25, 52

Conread position: 1-316
Cow position: chr24:35572354-35572039 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 92

Conread position: 3-145
Cow position: chr24:19769357-19769222 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 3-161
Cow position: chr24:18975064-18974909 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 3-166
Cow position: chr24:35405702-35405868 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 62, 0

Conread position: 3-174
Cow position: chr24:28600752-28600918 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 33, 28

Conread position: 3-186
Cow position: chr24:18734488-18734677 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 64, 96

Conread position: 3-199
Cow position: chr24:34315216-34315029 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 0

Conread position: 3-214
Cow position: chr24:17159614-17159409 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 63, 150

Conread position: 3-239
Cow position: chr24:11874769-11874994 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 60, 0

Conread position: 3-250
Cow position: chr24:42103233-42102989 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 190
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 156, 52

Conread position: 3-255
Cow position: chr24:35836372-35836621 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 163, 0

Conread position: 3-312
Cow position: chr24:19466066-19466377 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 104

Conread position: 3-312
Cow position: chr24:31302878-31302577 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 226
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 164, 67

Conread position: 3-313
Cow position: chr24:27593303-27593617 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 214
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 66, 255

Conread position: 3-313
Cow position: chr24:43692877-43693198 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 229
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 10, 92

Conread position: 3-315
Cow position: chr24:40055858-40056166 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 29

Conread position: 3-316
Cow position: chr24:6141096-6141404 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 92

Conread position: 3-316
Cow position: chr24:7030286-7030597 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 212
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 125

Conread position: 3-316
Cow position: chr24:9070572-9070883 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 43

Conread position: 3-316
Cow position: chr24:9087616-9087920 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 223
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 63, 99

Conread position: 3-316
Cow position: chr24:9550457-9550141 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 3-316
Cow position: chr24:11840042-11839732 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 62

Conread position: 3-316
Cow position: chr24:13304307-13304618 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 267, 61

Conread position: 3-316
Cow position: chr24:18222295-18222612 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 256

Conread position: 3-316
Cow position: chr24:19679740-19679424 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr24:19837364-19837051 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 30

Conread position: 3-316
Cow position: chr24:19886423-19886110 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 30

Conread position: 3-316
Cow position: chr24:22976004-22975688 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr24:23034533-23034217 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr24:27052632-27052939 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 20

Conread position: 3-316
Cow position: chr24:27906302-27905980 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 261

Conread position: 3-316
Cow position: chr24:29679443-29679755 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 63, 207

Conread position: 3-316
Cow position: chr24:33238684-33238998 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 61

Conread position: 3-316
Cow position: chr24:35822729-35823045 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr24:36173917-36174222 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 228
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 62, 31

Conread position: 3-316
Cow position: chr24:36486194-36486510 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 63, 92

Conread position: 3-316
Cow position: chr24:40034898-40035212 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 64, 37

Conread position: 4-174
Cow position: chr24:19804554-19804381 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 140
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 62, 0

Conread position: 9-315
Cow position: chr24:45216250-45216562 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 61, 35

Conread position: 10-283
Cow position: chr24:5931724-5931454 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 189
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 254, 54

Conread position: 10-313
Cow position: chr24:14124953-14124645 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 206
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 47, 0

Conread position: 10-316
Cow position: chr24:12695932-12696241 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 213
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 59, 248

Conread position: 10-316
Cow position: chr24:13041801-13042110 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 210
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 57, 0

Conread position: 12-146
Cow position: chr24:36404289-36404424 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 106

Conread position: 12-152
Cow position: chr24:8886766-8886633 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 12-155
Cow position: chr24:35794881-35795026 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 12-227
Cow position: chr24:15288716-15288499 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 12-266
Cow position: chr24:30235728-30235482 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 54, 95

Conread position: 12-282
Cow position: chr24:3493747-3493482 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 12-308
Cow position: chr24:12508351-12508055 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 10, 141

Conread position: 12-311
Cow position: chr24:32456285-32455985 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 172

Conread position: 12-313
Cow position: chr24:38814823-38814529 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 19

Conread position: 12-315
Cow position: chr24:18374633-18374346 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 214
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 125

Conread position: 12-315
Cow position: chr24:18741716-18742017 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 52

Conread position: 12-316
Cow position: chr24:2392050-2391743 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 19

Conread position: 12-316
Cow position: chr24:5141799-5141484 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 115

Conread position: 12-316
Cow position: chr24:5643721-5644035 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 55, 0

Conread position: 12-316
Cow position: chr24:6149880-6149585 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 258, 20

Conread position: 12-316
Cow position: chr24:6413665-6413358 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 246

Conread position: 12-316
Cow position: chr24:7001209-7001516 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 44

Conread position: 12-316
Cow position: chr24:11327546-11327238 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 55, 247

Conread position: 12-316
Cow position: chr24:11887016-11886716 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 54, 114

Conread position: 12-316
Cow position: chr24:15666551-15666858 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 19

Conread position: 12-316
Cow position: chr24:15919562-15919259 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 202
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 123

Conread position: 12-316
Cow position: chr24:17412593-17412298 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 210
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 55, 22

Conread position: 12-316
Cow position: chr24:20969944-20970240 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 20

Conread position: 12-316
Cow position: chr24:27502734-27503033 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 57

Conread position: 12-316
Cow position: chr24:27719900-27720195 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 12-316
Cow position: chr24:28062807-28062499 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 175

Conread position: 12-316
Cow position: chr24:28354006-28353711 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 19

Conread position: 12-316
Cow position: chr24:28689563-28689269 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 218
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 178, 21

Conread position: 12-316
Cow position: chr24:33621629-33621934 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 19

Conread position: 12-316
Cow position: chr24:36722580-36722283 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 220
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 54, 87

Conread position: 12-316
Cow position: chr24:39440702-39441005 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 19

Conread position: 13-316
Cow position: chr24:12146405-12146706 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 200
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 54, 21

Conread position: 13-316
Cow position: chr24:32609496-32609186 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 18-316
Cow position: chr24:27149246-27148959 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 46

Conread position: 18-316
Cow position: chr24:29191463-29191166 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 97

Conread position: 19-316
Cow position: chr24:33939036-33938737 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 207
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 48, 227

Conread position: 26-316
Cow position: chr24:30484104-30484382 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 10

Conread position: 35-313
Cow position: chr24:5652145-5652410 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 217, 29

Conread position: 37-316
Cow position: chr24:21770284-21770002 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 221

Conread position: 38-316
Cow position: chr24:12504226-12503946 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 191
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 29, 222

Conread position: 49-316
Cow position: chr24:6160267-6160532 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 16

Conread position: 66-315
Cow position: chr24:6154627-6154385 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 204, 111

Conread position: 67-316
Cow position: chr24:38643437-38643182 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 190
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 185, 58

Conread position: 76-315
Cow position: chr24:44987579-44987820 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 153

Conread position: 76-316
Cow position: chr24:13117756-13117515 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 194, 180

Conread position: 80-316
Cow position: chr24:17543844-17544080 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 5

Conread position: 82-316
Cow position: chr24:29360194-29360425 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 115-316
Cow position: chr24:33428660-33428458 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 151, 141

Conread position: 140-301
Cow position: chr24:41982712-41982872 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 118, 0

Conread position: 140-316
Cow position: chr24:17566902-17566728 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 129, 62

Conread position: 150-316
Cow position: chr24:44877549-44877383 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 31, 38

Conread position: 152-316
Cow position: chr24:37386641-37386812 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 153-316
Cow position: chr24:27889191-27889355 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 112, 104

Conread position: 154-316
Cow position: chr24:144305-144468 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 116, 102

Conread position: 160-316
Cow position: chr24:28601022-28601179 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 96, 115

Conread position: 162-316
Cow position: chr24:25424712-25424561 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 170-313
Cow position: chr24:19804158-19804014 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 96, 87

Conread position: 170-316
Cow position: chr24:31816251-31816106 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 26

Show alignments to all cow chromosomes.