Cow genome map

Conread name: rpigcb_12369.y1

Conread position: 1-299
Cow position: chr25:12360098-12359798 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 202
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 68, 256

Conread position: 1-313
Cow position: chr25:41387630-41387931 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 217
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 35, 14

Conread position: 1-316
Cow position: chr25:26282915-26282604 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 223
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 66, 126

Conread position: 2-312
Cow position: chr25:18564376-18564070 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 222, 45

Conread position: 2-313
Cow position: chr25:16921903-16922216 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 29

Conread position: 3-154
Cow position: chr25:40321403-40321555 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 63, 121

Conread position: 3-178
Cow position: chr25:21895000-21895174 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 148, 60

Conread position: 3-188
Cow position: chr25:25948513-25948692 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 41, 0

Conread position: 3-190
Cow position: chr25:6474209-6474399 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 63, 123

Conread position: 3-196
Cow position: chr25:16242085-16242274 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 133
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 3-203
Cow position: chr25:12817262-12817061 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 63, 125

Conread position: 3-203
Cow position: chr25:18969162-18968960 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 63, 0

Conread position: 3-210
Cow position: chr25:27821301-27821091 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 63, 0

Conread position: 3-245
Cow position: chr25:23351284-23351042 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 79

Conread position: 3-266
Cow position: chr25:23389394-23389646 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 117, 0

Conread position: 3-266
Cow position: chr25:36761992-36761742 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 60, 0

Conread position: 3-284
Cow position: chr25:26087405-26087121 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 201

Conread position: 3-308
Cow position: chr25:3145730-3145428 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 94

Conread position: 3-313
Cow position: chr25:5514896-5514587 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 124

Conread position: 3-313
Cow position: chr25:16738053-16738364 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 73, 174

Conread position: 3-315
Cow position: chr25:24726897-24727210 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 151

Conread position: 3-316
Cow position: chr25:8571980-8572296 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr25:10407528-10407844 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 253

Conread position: 3-316
Cow position: chr25:12171346-12171039 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 217
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 263, 55

Conread position: 3-316
Cow position: chr25:17658499-17658189 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 61

Conread position: 3-316
Cow position: chr25:18885597-18885906 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 30

Conread position: 3-316
Cow position: chr25:25510782-25510469 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 166

Conread position: 3-316
Cow position: chr25:26654795-26654482 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 29

Conread position: 3-316
Cow position: chr25:34012864-34013179 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 64, 0

Conread position: 3-316
Cow position: chr25:34501796-34502107 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 122, 30

Conread position: 3-316
Cow position: chr25:35566996-35567310 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr25:39385941-39386255 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 255

Conread position: 3-316
Cow position: chr25:41107642-41107335 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 31

Conread position: 9-304
Cow position: chr25:20069604-20069313 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 130

Conread position: 10-316
Cow position: chr25:3992673-3992364 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 10-316
Cow position: chr25:7069409-7069100 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 207
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 57, 0

Conread position: 10-316
Cow position: chr25:17585049-17585359 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 178

Conread position: 10-316
Cow position: chr25:35649721-35649412 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 57, 0

Conread position: 10-316
Cow position: chr25:36351627-36351318 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 36, 116

Conread position: 11-135
Cow position: chr25:18988258-18988132 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 12-152
Cow position: chr25:12778651-12778795 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 12-152
Cow position: chr25:13566724-13566584 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 115

Conread position: 12-152
Cow position: chr25:19679223-19679081 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 12-174
Cow position: chr25:10330521-10330677 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 92

Conread position: 12-188
Cow position: chr25:16319253-16319423 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 54, 20

Conread position: 12-246
Cow position: chr25:9842881-9842650 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 180
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 54, 80

Conread position: 12-246
Cow position: chr25:10137975-10137751 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 184
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 221, 51

Conread position: 12-312
Cow position: chr25:11056753-11056456 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 52, 22

Conread position: 12-312
Cow position: chr25:18323472-18323775 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 246

Conread position: 12-313
Cow position: chr25:21209067-21209372 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 157

Conread position: 12-315
Cow position: chr25:8576570-8576268 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 208
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 57, 22

Conread position: 12-316
Cow position: chr25:2110954-2110658 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 37

Conread position: 12-316
Cow position: chr25:4488606-4488310 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 40

Conread position: 12-316
Cow position: chr25:20651148-20650841 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 54, 221

Conread position: 12-316
Cow position: chr25:26238748-26238447 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 52

Conread position: 12-316
Cow position: chr25:35340209-35339909 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 52

Conread position: 12-316
Cow position: chr25:35446814-35446520 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 209
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 258, 46

Conread position: 12-316
Cow position: chr25:35607844-35608152 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 55, 19

Conread position: 12-316
Cow position: chr25:36392083-36392389 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 211

Conread position: 12-316
Cow position: chr25:38440041-38439735 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 213
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 135, 52

Conread position: 12-316
Cow position: chr25:41355916-41356223 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 246

Conread position: 13-153
Cow position: chr25:33550385-33550244 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 53, 105

Conread position: 13-316
Cow position: chr25:8120656-8120351 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 119

Conread position: 13-316
Cow position: chr25:14833782-14834093 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 226
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 136, 19

Conread position: 14-316
Cow position: chr25:17119314-17119611 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 41

Conread position: 14-316
Cow position: chr25:26352887-26353186 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 212
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 52, 139

Conread position: 15-316
Cow position: chr25:8482435-8482739 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 243

Conread position: 18-308
Cow position: chr25:6470345-6470632 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 121

Conread position: 19-316
Cow position: chr25:27868674-27868384 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 214
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 45, 62

Conread position: 38-316
Cow position: chr25:6606502-6606773 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 193
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 29, 219

Conread position: 38-316
Cow position: chr25:41366314-41366585 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 185
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 87

Conread position: 41-316
Cow position: chr25:26896890-26896614 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 26, 9

Conread position: 49-316
Cow position: chr25:33839231-33838962 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 209

Conread position: 66-316
Cow position: chr25:22549788-22550023 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 30, 116

Conread position: 69-316
Cow position: chr25:4119491-4119247 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 196, 190

Conread position: 82-312
Cow position: chr25:12521567-12521813 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 46, 20

Conread position: 82-316
Cow position: chr25:15006012-15005780 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 90

Conread position: 114-316
Cow position: chr25:27510480-27510686 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 28, 11

Conread position: 122-312
Cow position: chr25:23912960-23913148 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 147, 44

Conread position: 125-316
Cow position: chr25:28274677-28274869 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 157
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 131

Conread position: 131-313
Cow position: chr25:6988077-6988260 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 126, 0

Conread position: 131-316
Cow position: chr25:19570637-19570822 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 139, 37

Conread position: 140-316
Cow position: chr25:11826753-11826931 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 45, 117

Conread position: 142-315
Cow position: chr25:40906527-40906701 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 126, 116

Conread position: 150-316
Cow position: chr25:35612592-35612759 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 116, 109

Conread position: 154-308
Cow position: chr25:18072941-18072786 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 116, 104

Conread position: 173-308
Cow position: chr25:23394581-23394448 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 63

Conread position: 174-313
Cow position: chr25:448983-449123 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 95, 83

Conread position: 192-316
Cow position: chr25:5824167-5824042 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 74, 64

Show alignments to all cow chromosomes.