Cow genome map
| Conread name: | rpigcb_14271.y1 |
| Conread position: | 1-261 |
| Cow position: | chr1:76780026-76780305 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 25-140 |
| Cow position: | chr1:17066132-17066016 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 80 |
| Conread position: | 26-241 |
| Cow position: | chr1:34311204-34310993 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 33-260 |
| Cow position: | chr1:11831645-11831419 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 10, 68 |
| Conread position: | 36-261 |
| Cow position: | chr1:64479609-64479827 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 147, 60 |
| Conread position: | 37-183 |
| Cow position: | chr1:47427912-47427765 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 37-189 |
| Cow position: | chr1:80329681-80329833 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-192 |
| Cow position: | chr1:41092812-41092974 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 37-193 |
| Cow position: | chr1:56858583-56858426 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 88 |
| Conread position: | 37-195 |
| Cow position: | chr1:69290479-69290323 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 37-205 |
| Cow position: | chr1:3020422-3020589 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 101, 53 |
| Conread position: | 37-209 |
| Cow position: | chr1:14560176-14560342 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 108, 84 |
| Conread position: | 37-209 |
| Cow position: | chr1:25885740-25885911 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 154, 101 |
| Conread position: | 37-256 |
| Cow position: | chr1:39244201-39244425 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 37-258 |
| Cow position: | chr1:74713819-74713601 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 133, 40 |
| Conread position: | 37-260 |
| Cow position: | chr1:37432737-37432505 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 100, 91 |
| Conread position: | 37-262 |
| Cow position: | chr1:85591-85365 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 83, 44 |
| Conread position: | 37-262 |
| Cow position: | chr1:71555450-71555657 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 37-264 |
| Cow position: | chr1:18223508-18223726 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 37-264 |
| Cow position: | chr1:82572884-82573109 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 89 |
| Conread position: | 37-264 |
| Cow position: | chr1:85409509-85409729 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 37-267 |
| Cow position: | chr1:31232977-31233212 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 38-195 |
| Cow position: | chr1:79915575-79915415 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 96, 79 |
| Conread position: | 38-197 |
| Cow position: | chr1:58341662-58341499 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 39-189 |
| Cow position: | chr1:58881951-58882100 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 39-191 |
| Cow position: | chr1:28512289-28512441 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 87 |
| Conread position: | 39-246 |
| Cow position: | chr1:49728235-49728030 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 104, 88 |
| Conread position: | 39-264 |
| Cow position: | chr1:30042086-30041871 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 39-264 |
| Cow position: | chr1:40164592-40164388 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 40-202 |
| Cow position: | chr1:61242074-61241916 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 41-267 |
| Cow position: | chr1:40420101-40420313 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 123, 40 |
| Conread position: | 43-248 |
| Cow position: | chr1:22495918-22495704 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 85, 176 |
| Conread position: | 45-182 |
| Cow position: | chr1:34627245-34627107 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 45-193 |
| Cow position: | chr1:23887313-23887166 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 46-181 |
| Cow position: | chr1:76223664-76223800 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 72, 89 |
| Conread position: | 46-190 |
| Cow position: | chr1:11469323-11469179 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 24 |
| Conread position: | 47-264 |
| Cow position: | chr1:92550790-92551001 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 48-227 |
| Cow position: | chr1:27546166-27545993 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 49-264 |
| Cow position: | chr1:77755606-77755816 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 55-229 |
| Cow position: | chr1:63133980-63133799 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 88, 51 |
| Conread position: | 56-193 |
| Cow position: | chr1:86708978-86709119 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 89, 74 |
| Conread position: | 56-243 |
| Cow position: | chr1:2296702-2296517 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 56-264 |
| Cow position: | chr1:11878822-11879027 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 87, 134 |
| Conread position: | 67-264 |
| Cow position: | chr1:52207020-52206823 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 99 |
| Conread position: | 72-264 |
| Cow position: | chr1:69061563-69061380 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 73-264 |
| Cow position: | chr1:64098954-64099133 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 181, 38 |
| Conread position: | 80-269 |
| Cow position: | chr1:45978235-45978047 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 94-264 |
| Cow position: | chr1:102556902-102556734 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 108-264 |
| Cow position: | chr1:19439723-19439879 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 74 |
| Conread position: | 144-264 |
| Cow position: | chr1:22070521-22070401 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-264 |
| Cow position: | chr1:81371429-81371548 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.