Cow genome map
| Conread name: | rpigcb_14271.y1 |
| Conread position: | 1-264 |
| Cow position: | chr16:5131366-5131617 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 7-264 |
| Cow position: | chr16:11161798-11161551 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 6, 91 |
| Conread position: | 25-264 |
| Cow position: | chr16:43850460-43850690 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 13, 100 |
| Conread position: | 36-187 |
| Cow position: | chr16:17003800-17003648 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 37-129 |
| Cow position: | chr16:23878702-23878610 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 80 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-191 |
| Cow position: | chr16:6264940-6265097 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 64 |
| Conread position: | 37-191 |
| Cow position: | chr16:45057766-45057611 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 37-192 |
| Cow position: | chr16:42709085-42709242 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 37-208 |
| Cow position: | chr16:48894464-48894629 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 37-225 |
| Cow position: | chr16:32352198-32352005 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 37-234 |
| Cow position: | chr16:29204692-29204884 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 100, 31 |
| Conread position: | 37-247 |
| Cow position: | chr16:12243187-12243411 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 65, 10 |
| Conread position: | 37-248 |
| Cow position: | chr16:53516272-53516482 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 88, 66 |
| Conread position: | 37-262 |
| Cow position: | chr16:47781652-47781436 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 37-264 |
| Cow position: | chr16:14444268-14444050 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 37-264 |
| Cow position: | chr16:14799380-14799607 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-264 |
| Cow position: | chr16:16118814-16118595 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 109, 53 |
| Conread position: | 37-264 |
| Cow position: | chr16:17867127-17867346 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 37-264 |
| Cow position: | chr16:23034938-23035161 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 91 |
| Conread position: | 37-264 |
| Cow position: | chr16:31374815-31375038 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 100, 40 |
| Conread position: | 37-264 |
| Cow position: | chr16:41680405-41680629 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 57 |
| Conread position: | 37-264 |
| Cow position: | chr16:47391395-47391181 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 37-279 |
| Cow position: | chr16:42406218-42405976 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 140, 88 |
| Conread position: | 38-193 |
| Cow position: | chr16:12473678-12473523 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 104, 31 |
| Conread position: | 38-264 |
| Cow position: | chr16:4295160-4295387 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 39-146 |
| Cow position: | chr16:2371441-2371548 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-191 |
| Cow position: | chr16:16608169-16608018 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 146, 136 |
| Conread position: | 39-249 |
| Cow position: | chr16:30572273-30572476 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 182, 95 |
| Conread position: | 39-267 |
| Cow position: | chr16:13044202-13043957 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 40-264 |
| Cow position: | chr16:15509290-15509070 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 82, 88 |
| Conread position: | 44-189 |
| Cow position: | chr16:55910018-55910167 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 53-264 |
| Cow position: | chr16:22785692-22785904 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 56-241 |
| Cow position: | chr16:6031301-6031480 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 58-171 |
| Cow position: | chr16:9703273-9703387 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 64-260 |
| Cow position: | chr16:19153043-19152844 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 76, 61 |
| Conread position: | 72-264 |
| Cow position: | chr16:36910710-36910905 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 159 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 74-264 |
| Cow position: | chr16:2731820-2732002 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 80-264 |
| Cow position: | chr16:4856167-4856354 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 87-264 |
| Cow position: | chr16:37441818-37441991 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 88-264 |
| Cow position: | chr16:56373937-56374120 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 33 |
| Conread position: | 89-241 |
| Cow position: | chr16:341564-341407 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 101-264 |
| Cow position: | chr16:15734869-15734711 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 75 |
Show alignments to all cow chromosomes.