Cow genome map
| Conread name: | rpigcb_14271.y1 |
| Conread position: | 2-264 |
| Cow position: | chr5:51076207-51076480 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 21, 227 |
| Conread position: | 22-187 |
| Cow position: | chr5:57147467-57147302 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 121, 96 |
| Conread position: | 23-200 |
| Cow position: | chr5:53599656-53599832 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 6, 15 |
| Conread position: | 25-193 |
| Cow position: | chr5:35584029-35583858 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 25-246 |
| Cow position: | chr5:28770652-28770435 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 33-193 |
| Cow position: | chr5:73051513-73051348 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 35-270 |
| Cow position: | chr5:33564247-33564018 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 224, 11 |
| Conread position: | 36-256 |
| Cow position: | chr5:15882073-15882293 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 103, 141 |
| Conread position: | 37-126 |
| Cow position: | chr5:35748922-35748833 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 77 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-190 |
| Cow position: | chr5:38911451-38911297 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 86, 43 |
| Conread position: | 37-190 |
| Cow position: | chr5:46335094-46334940 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 90, 66 |
| Conread position: | 37-191 |
| Cow position: | chr5:51953253-51953099 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 87, 140 |
| Conread position: | 37-192 |
| Cow position: | chr5:6196672-6196825 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 97, 66 |
| Conread position: | 37-193 |
| Cow position: | chr5:55985435-55985593 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 30 |
| Conread position: | 37-193 |
| Cow position: | chr5:57964918-57965069 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 37-206 |
| Cow position: | chr5:56109780-56109943 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 103, 46 |
| Conread position: | 37-229 |
| Cow position: | chr5:54761258-54761051 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 92, 32 |
| Conread position: | 37-247 |
| Cow position: | chr5:21145850-21146053 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 101, 126 |
| Conread position: | 37-260 |
| Cow position: | chr5:26562523-26562310 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 37-264 |
| Cow position: | chr5:10455746-10455521 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 144, 22 |
| Conread position: | 37-264 |
| Cow position: | chr5:13575370-13575608 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 106, 14 |
| Conread position: | 37-264 |
| Cow position: | chr5:37048440-37048215 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 143, 39 |
| Conread position: | 37-264 |
| Cow position: | chr5:57127835-57127605 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 37-267 |
| Cow position: | chr5:29431275-29431485 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 37-267 |
| Cow position: | chr5:60968813-60968570 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 37-269 |
| Cow position: | chr5:25925493-25925725 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 104, 90 |
| Conread position: | 37-294 |
| Cow position: | chr5:56742040-56741797 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 106, 56 |
| Conread position: | 39-193 |
| Cow position: | chr5:49238819-49238971 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 39-248 |
| Cow position: | chr5:62580190-62579978 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 92, 150 |
| Conread position: | 40-188 |
| Cow position: | chr5:1304859-1305008 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 102, 41 |
| Conread position: | 44-206 |
| Cow position: | chr5:11235951-11235794 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 75 |
| Conread position: | 45-193 |
| Cow position: | chr5:38274145-38273996 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 78, 127 |
| Conread position: | 47-193 |
| Cow position: | chr5:61876901-61877049 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 49-198 |
| Cow position: | chr5:21937348-21937498 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 55-204 |
| Cow position: | chr5:42587560-42587714 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 71, 85 |
| Conread position: | 56-264 |
| Cow position: | chr5:27493073-27492860 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 57-191 |
| Cow position: | chr5:20649187-20649321 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 86, 44 |
| Conread position: | 57-245 |
| Cow position: | chr5:56826160-56825957 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 57-264 |
| Cow position: | chr5:54157065-54156859 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 24, 135 |
| Conread position: | 58-173 |
| Cow position: | chr5:12602034-12601920 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 58-264 |
| Cow position: | chr5:60725395-60725199 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 117, 67 |
| Conread position: | 63-264 |
| Cow position: | chr5:21166693-21166895 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 60, 115 |
| Conread position: | 64-265 |
| Cow position: | chr5:19299392-19299602 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 67-265 |
| Cow position: | chr5:50156227-50156427 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 69, 73 |
| Conread position: | 69-262 |
| Cow position: | chr5:9233029-9233216 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 144, 58 |
| Conread position: | 71-258 |
| Cow position: | chr5:62863735-62863912 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 98, 56 |
| Conread position: | 80-264 |
| Cow position: | chr5:45911954-45912134 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 80-282 |
| Cow position: | chr5:67577298-67577100 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 81-264 |
| Cow position: | chr5:23234817-23234628 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 82-257 |
| Cow position: | chr5:9585403-9585568 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 84-261 |
| Cow position: | chr5:9025291-9025121 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 49, 43 |
| Conread position: | 85-264 |
| Cow position: | chr5:10785882-10786070 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 97-264 |
| Cow position: | chr5:31550947-31550777 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 35 |
| Conread position: | 134-260 |
| Cow position: | chr5:34168456-34168331 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.