Cow genome map
| Conread name: | rpigcb_14271.y1 |
| Conread position: | 1-262 |
| Cow position: | chrX:24286378-24286130 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-264 |
| Cow position: | chrX:16817094-16816837 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 69 |
| Conread position: | 25-201 |
| Cow position: | chrX:2700707-2700880 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 25-264 |
| Cow position: | chrX:24201575-24201347 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 83 |
| Conread position: | 25-264 |
| Cow position: | chrX:25106624-25106377 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 25-267 |
| Cow position: | chrX:8558057-8558300 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 34-264 |
| Cow position: | chrX:18518194-18517953 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 75, 7 |
| Conread position: | 36-184 |
| Cow position: | chrX:18467853-18467697 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 40, 125 |
| Conread position: | 37-189 |
| Cow position: | chrX:4625294-4625141 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 37-189 |
| Cow position: | chrX:27458345-27458486 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 37-191 |
| Cow position: | chrX:5150318-5150466 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 37-191 |
| Cow position: | chrX:10462706-10462552 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 37-191 |
| Cow position: | chrX:25921398-25921549 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 37-192 |
| Cow position: | chrX:19210318-19210476 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 53 |
| Conread position: | 37-192 |
| Cow position: | chrX:31386267-31386112 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 145, 96 |
| Conread position: | 37-195 |
| Cow position: | chrX:2078920-2079075 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 145, 88 |
| Conread position: | 37-195 |
| Cow position: | chrX:5660437-5660275 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 109, 99 |
| Conread position: | 37-195 |
| Cow position: | chrX:24194175-24194016 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 66, 90 |
| Conread position: | 37-195 |
| Cow position: | chrX:37137888-37138044 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 110, 70 |
| Conread position: | 37-196 |
| Cow position: | chrX:24203573-24203416 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 37-198 |
| Cow position: | chrX:13060931-13060768 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 99, 86 |
| Conread position: | 37-213 |
| Cow position: | chrX:19127248-19127424 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 147, 97 |
| Conread position: | 37-246 |
| Cow position: | chrX:24951982-24952190 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 106, 21 |
| Conread position: | 37-254 |
| Cow position: | chrX:19017856-19018085 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 207 |
| Conread position: | 37-254 |
| Cow position: | chrX:20505095-20504877 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 101, 169 |
| Conread position: | 37-264 |
| Cow position: | chrX:2186642-2186427 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 37-264 |
| Cow position: | chrX:4590339-4590119 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 99, 64 |
| Conread position: | 37-264 |
| Cow position: | chrX:10312126-10311901 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 99, 154 |
| Conread position: | 37-264 |
| Cow position: | chrX:18814555-18814339 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 37-264 |
| Cow position: | chrX:21885722-21885945 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 61, 31 |
| Conread position: | 37-264 |
| Cow position: | chrX:43647368-43647597 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 105, 69 |
| Conread position: | 37-267 |
| Cow position: | chrX:4597330-4597569 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 94, 63 |
| Conread position: | 37-279 |
| Cow position: | chrX:40353695-40353462 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 82 |
| Conread position: | 37-298 |
| Cow position: | chrX:25453569-25453311 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 101 |
| Conread position: | 38-140 |
| Cow position: | chrX:25653500-25653398 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-264 |
| Cow position: | chrX:956865-956648 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 182 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 41, 90 |
| Conread position: | 38-264 |
| Cow position: | chrX:11675457-11675232 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 39-190 |
| Cow position: | chrX:11982984-11982836 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 98, 33 |
| Conread position: | 39-263 |
| Cow position: | chrX:21816654-21816427 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 88 |
| Conread position: | 39-264 |
| Cow position: | chrX:12688692-12688918 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 104, 63 |
| Conread position: | 41-264 |
| Cow position: | chrX:31817062-31816857 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 41-266 |
| Cow position: | chrX:28939181-28938958 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 41-280 |
| Cow position: | chrX:9051045-9051281 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 141, 86 |
| Conread position: | 43-264 |
| Cow position: | chrX:3404758-3404982 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 45-190 |
| Cow position: | chrX:18699979-18700126 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 91, 119 |
| Conread position: | 46-187 |
| Cow position: | chrX:10534459-10534318 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 97, 84 |
| Conread position: | 47-193 |
| Cow position: | chrX:5675631-5675778 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 125 |
| Conread position: | 53-202 |
| Cow position: | chrX:6472075-6471929 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 117, 44 |
| Conread position: | 56-264 |
| Cow position: | chrX:19216947-19217160 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 119, 71 |
| Conread position: | 59-226 |
| Cow position: | chrX:37364784-37364616 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 82, 131 |
| Conread position: | 80-248 |
| Cow position: | chrX:37956919-37956753 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 47 |
| Conread position: | 80-262 |
| Cow position: | chrX:23253844-23254032 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 62, 135 |
| Conread position: | 80-268 |
| Cow position: | chrX:9910399-9910593 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 135, 9 |
Show alignments to all cow chromosomes.