Cow genome map
| Conread name: | rpigcb_17669.y1 |
| Conread position: | 1-175 |
| Cow position: | chr19:23650307-23650481 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-252 |
| Cow position: | chr19:14940825-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-302 |
| Cow position: | chr19:14948302-14948001 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-368 |
| Cow position: | chr19:23597362-23597730 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 347, 0 |
| Conread position: | 1-421 |
| Cow position: | chr19:23650055-23650475 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-449 |
| Cow position: | chr19:20635468-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 51, 68 |
| Conread position: | 1-464 |
| Cow position: | chr19:23613681-23614144 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 291 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 69, 51 |
| Conread position: | 1-466 |
| Cow position: | chr19:20677864-20678329 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 313, 322 |
| Conread position: | 1-466 |
| Cow position: | chr19:23614185-23614650 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 53, 61 |
| Conread position: | 1-467 |
| Cow position: | chr19:14960226-14959764 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 298, 77 |
| Conread position: | 1-470 |
| Cow position: | chr19:20678032-20678501 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 45, 61 |
| Conread position: | 1-484 |
| Cow position: | chr19:14960310-14959829 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 305 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 108, 114 |
| Conread position: | 1-494 |
| Cow position: | chr19:14940573-14941066 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 62 |
| Conread position: | 1-495 |
| Cow position: | chr19:23649971-23650465 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 456, 463 |
| Conread position: | 1-503 |
| Cow position: | chr19:23597194-23597696 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 114 |
| Conread position: | 1-503 |
| Cow position: | chr19:23613933-23614435 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 309 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 314, 302 |
| Conread position: | 1-507 |
| Cow position: | chr19:20635552-20635046 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 131 |
| Conread position: | 1-512 |
| Cow position: | chr19:14940237-14940748 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 314 |
| Conread position: | 1-512 |
| Cow position: | chr19:14940321-14940832 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 1-512 |
| Cow position: | chr19:14940405-14940916 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 224 |
| Conread position: | 1-512 |
| Cow position: | chr19:14960060-14959565 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 311 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 177, 188 |
| Conread position: | 1-512 |
| Cow position: | chr19:23596945-23597453 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 136, 91 |
| Conread position: | 1-512 |
| Cow position: | chr19:23613849-23614360 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 318 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 64, 41 |
| Conread position: | 1-512 |
| Cow position: | chr19:23614101-23614612 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 59 |
| Conread position: | 1-512 |
| Cow position: | chr19:23649467-23649978 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-512 |
| Cow position: | chr19:23649551-23650062 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 433, 450 |
| Conread position: | 1-512 |
| Cow position: | chr19:23649719-23650230 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-512 |
| Cow position: | chr19:43570227-43569718 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 54, 64 |
| Conread position: | 1-514 |
| Cow position: | chr19:14959572-14959074 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 62, 54 |
| Conread position: | 1-514 |
| Cow position: | chr19:20678200-20678713 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 313 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 1-514 |
| Cow position: | chr19:23613513-23614026 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 320 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 54, 33 |
| Conread position: | 1-514 |
| Cow position: | chr19:23614017-23614530 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 229, 218 |
| Conread position: | 1-514 |
| Cow position: | chr19:23614353-23614866 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 47 |
| Conread position: | 1-514 |
| Cow position: | chr19:23614521-23615034 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 1-514 |
| Cow position: | chr19:23614605-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 312 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 1-514 |
| Cow position: | chr19:23649635-23650148 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 59 |
| Conread position: | 1-515 |
| Cow position: | chr19:23649803-23650317 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 166 |
| Conread position: | 1-516 |
| Cow position: | chr19:23614437-23614952 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 62, 49 |
| Conread position: | 1-520 |
| Cow position: | chr19:14940489-14941008 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 316 |
| Conread position: | 1-520 |
| Cow position: | chr19:20635636-20635117 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 317 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 230, 215 |
| Conread position: | 1-520 |
| Cow position: | chr19:23613429-23613949 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 319 |
| Conread position: | 2-398 |
| Cow position: | chr19:14948385-14947989 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 273, 268 |
| Conread position: | 2-512 |
| Cow position: | chr19:23649888-23650398 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 227 |
| Conread position: | 2-522 |
| Cow position: | chr19:14940154-14940675 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 228 |
| Conread position: | 3-257 |
| Cow position: | chr19:14959081-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 175, 184 |
| Conread position: | 3-343 |
| Cow position: | chr19:23650141-23650481 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-380 |
| Cow position: | chr19:20678286-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 59, 45 |
| Conread position: | 3-467 |
| Cow position: | chr19:20677698-20678162 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-467 |
| Cow position: | chr19:43570383-43569929 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 299 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 3-503 |
| Cow position: | chr19:43570141-43569645 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 52, 59 |
| Conread position: | 3-512 |
| Cow position: | chr19:14940071-14940580 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 3-512 |
| Cow position: | chr19:23597112-23597621 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 314 |
| Conread position: | 3-514 |
| Cow position: | chr19:23613767-23614280 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 59 |
| Conread position: | 3-520 |
| Cow position: | chr19:20677782-20678299 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 106, 113 |
| Conread position: | 4-341 |
| Cow position: | chr19:14959158-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 261, 38 |
| Conread position: | 4-512 |
| Cow position: | chr19:20677615-20678123 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 50, 58 |
| Conread position: | 4-514 |
| Cow position: | chr19:14939988-14940498 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 433, 426 |
| Conread position: | 4-514 |
| Cow position: | chr19:23649302-23649812 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 106 |
| Conread position: | 5-467 |
| Cow position: | chr19:20678120-20678582 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 292 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 49, 66 |
| Conread position: | 6-383 |
| Cow position: | chr19:14959240-14958869 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 33, 53 |
| Conread position: | 6-512 |
| Cow position: | chr19:23649388-23649894 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 6-514 |
| Cow position: | chr19:23613350-23613860 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 7-514 |
| Cow position: | chr19:23613603-23614110 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 243 |
| Conread position: | 9-521 |
| Cow position: | chr19:14960385-14959875 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 10-514 |
| Cow position: | chr19:23596870-23597371 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 315 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 106, 100 |
| Conread position: | 28-431 |
| Cow position: | chr19:14959711-14959310 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 65-512 |
| Cow position: | chr19:43570247-43569800 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 245, 259 |
| Conread position: | 68-512 |
| Cow position: | chr19:14960411-14959969 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 0 |
| Conread position: | 68-527 |
| Cow position: | chr19:14959262-14958811 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 247, 141 |
| Conread position: | 70-479 |
| Cow position: | chr19:14948401-14947992 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 156, 170 |
| Conread position: | 70-504 |
| Cow position: | chr19:23597095-23597529 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 155 |
| Conread position: | 81-512 |
| Cow position: | chr19:20635640-20635209 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 234, 213 |
| Conread position: | 81-520 |
| Cow position: | chr19:20677440-20677879 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 83-514 |
| Cow position: | chr19:23649297-23649728 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 106-521 |
| Cow position: | chr19:14948448-14948034 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 204, 45 |
| Conread position: | 114-512 |
| Cow position: | chr19:14959709-14959313 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 196, 58 |
| Conread position: | 114-515 |
| Cow position: | chr19:14940014-14940415 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 201 |
| Conread position: | 115-512 |
| Cow position: | chr19:14960448-14960053 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 238-514 |
| Cow position: | chr19:43570242-43569966 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 243, 231 |
| Conread position: | 264-520 |
| Cow position: | chr19:14939996-14940252 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 46, 53 |
Show alignments to all cow chromosomes.