Cow genome map

Conread name: rpigcb_17669.y1

Conread position: 1-338
Cow position: chr22:11641105-11641442 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 221
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 53, 65

Conread position: 1-344
Cow position: chr22:12399093-12398750 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 232
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 108, 114

Conread position: 1-345
Cow position: chr22:11701348-11701692 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 212
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 219, 226

Conread position: 1-392
Cow position: chr22:12385335-12384944 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 250
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 309, 316

Conread position: 1-421
Cow position: chr22:11641021-11641441 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 271
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 49, 58

Conread position: 1-421
Cow position: chr22:12399177-12398757 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 145

Conread position: 1-464
Cow position: chr22:12399429-12398966 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 41

Conread position: 1-466
Cow position: chr22:14429809-14430274 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 273
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 321, 308

Conread position: 1-466
Cow position: chr22:14429977-14430442 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 283
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 73, 55

Conread position: 1-466
Cow position: chr22:46654344-46654809 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 284
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 76, 72

Conread position: 1-467
Cow position: chr22:14429641-14430107 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 289
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 49, 61

Conread position: 1-467
Cow position: chr22:14468054-14468520 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 288
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 110, 115

Conread position: 1-476
Cow position: chr22:46654176-46654651 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 295
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 76, 72

Conread position: 1-496
Cow position: chr22:12498949-12499444 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-499
Cow position: chr22:12418948-12418450 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 302
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 1-503
Cow position: chr22:11640937-11641439 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 69

Conread position: 1-503
Cow position: chr22:11701180-11701682 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 308
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 63, 58

Conread position: 1-503
Cow position: chr22:12399261-12398759 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 41

Conread position: 1-512
Cow position: chr22:12399513-12399002 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 61

Conread position: 1-512
Cow position: chr22:12458529-12458018 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 390

Conread position: 1-512
Cow position: chr22:12475890-12475379 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 316

Conread position: 1-512
Cow position: chr22:12499201-12499712 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 114

Conread position: 1-512
Cow position: chr22:12499369-12499880 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-512
Cow position: chr22:46654092-46654603 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 31

Conread position: 1-514
Cow position: chr22:12399597-12399084 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 224

Conread position: 1-514
Cow position: chr22:12399765-12399252 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 61

Conread position: 1-514
Cow position: chr22:12431325-12430812 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 50

Conread position: 1-514
Cow position: chr22:12475974-12475461 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 41

Conread position: 1-514
Cow position: chr22:12476226-12475713 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 316

Conread position: 1-514
Cow position: chr22:12476310-12475797 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-514
Cow position: chr22:12499033-12499546 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 316

Conread position: 1-514
Cow position: chr22:12499117-12499630 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 314
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 394, 404

Conread position: 1-515
Cow position: chr22:12399681-12399167 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 61

Conread position: 1-515
Cow position: chr22:12458277-12457761 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 140

Conread position: 1-519
Cow position: chr22:12475806-12475287 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 513, 0

Conread position: 1-519
Cow position: chr22:12499453-12499972 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 513, 0

Conread position: 1-520
Cow position: chr22:12399345-12398826 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-520
Cow position: chr22:12431577-12431058 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 318
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 62, 50

Conread position: 1-520
Cow position: chr22:12432249-12431730 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 311
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 40, 57

Conread position: 1-520
Cow position: chr22:12499285-12499804 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 41

Conread position: 2-344
Cow position: chr22:12385250-12384908 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 225
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 218, 226

Conread position: 2-464
Cow position: chr22:12431996-12431533 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 286
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 216, 222

Conread position: 2-503
Cow position: chr22:12432164-12431663 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 309
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 133, 144

Conread position: 2-514
Cow position: chr22:12419300-12418769 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 303
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 107, 114

Conread position: 2-520
Cow position: chr22:12432332-12431814 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 319
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 513, 506

Conread position: 2-520
Cow position: chr22:12458612-12458094 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-464
Cow position: chr22:12431239-12430778 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 282
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 299, 314

Conread position: 3-466
Cow position: chr22:14429727-14430190 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 275
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 106, 112

Conread position: 3-512
Cow position: chr22:11640771-11641280 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 308
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 3-514
Cow position: chr22:11640686-11641198 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 316
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 11, 113

Conread position: 3-514
Cow position: chr22:12431659-12431148 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 311
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 3-514
Cow position: chr22:12476140-12475629 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 316
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 392, 402

Conread position: 4-466
Cow position: chr22:14430316-14430778 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 279
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 75, 51

Conread position: 4-512
Cow position: chr22:11640856-11641364 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 314

Conread position: 4-512
Cow position: chr22:12432078-12431570 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 304

Conread position: 4-513
Cow position: chr22:12385416-12384907 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 142

Conread position: 4-514
Cow position: chr22:12476055-12475545 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 315

Conread position: 5-503
Cow position: chr22:12431741-12431243 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 141

Conread position: 6-514
Cow position: chr22:12431404-12430896 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-514
Cow position: chr22:12431151-12430644 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 316
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 379, 388

Conread position: 8-514
Cow position: chr22:12399920-12399420 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 314
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 44, 57

Conread position: 9-499
Cow position: chr22:12419024-12418534 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-512
Cow position: chr22:12399841-12399338 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 53

Conread position: 15-512
Cow position: chr22:11640615-11641112 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 298
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 37, 53

Conread position: 16-512
Cow position: chr22:11701111-11701607 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 302
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 39, 46

Conread position: 16-556
Cow position: chr22:11666457-11666999 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 341
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 39, 46

Conread position: 31-466
Cow position: chr22:14468000-14468435 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 255
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 277, 292

Conread position: 61-514
Cow position: chr22:12432441-12431988 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 274
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 61-520
Cow position: chr22:12431769-12431310 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 61-520
Cow position: chr22:12476334-12475875 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 61-520
Cow position: chr22:12498925-12499384 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 63-520
Cow position: chr22:12385695-12385236 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 290
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 161, 142

Conread position: 65-512
Cow position: chr22:12419321-12418857 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 255
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 238, 0

Conread position: 66-515
Cow position: chr22:12544893-12545342 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 266
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 209, 216

Conread position: 69-517
Cow position: chr22:46654076-46654524 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 280
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 40, 45

Conread position: 71-503
Cow position: chr22:12458627-12458195 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 246

Conread position: 112-496
Cow position: chr22:12432474-12432090 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 234
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 198, 208

Conread position: 114-468
Cow position: chr22:14429670-14430024 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 218
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 114-503
Cow position: chr22:12498894-12499283 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 253
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 112, 116

Conread position: 114-507
Cow position: chr22:12476365-12475972 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 255
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 112, 117

Conread position: 115-504
Cow position: chr22:12419002-12418613 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 242
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 115-512
Cow position: chr22:46654038-46654435 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 256
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 276, 292

Conread position: 138-504
Cow position: chr22:12476425-12476059 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 239
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 172, 178

Conread position: 144-512
Cow position: chr22:12498840-12499208 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 241
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 160, 171

Conread position: 153-508
Cow position: chr22:12544476-12544831 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 228
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 51

Conread position: 155-512
Cow position: chr22:12458627-12458270 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 229
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 230, 246

Conread position: 184-504
Cow position: chr22:12419017-12418697 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 214
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 201-512
Cow position: chr22:46653956-46654267 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 204
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 48, 41

Conread position: 222-512
Cow position: chr22:12498834-12499124 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 183
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 238, 246

Conread position: 267-522
Cow position: chr22:11640615-11640871 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 170
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 44, 57

Show alignments to all cow chromosomes.