Cow genome map
| Conread name: | rpigcb_17669.y1 |
| Conread position: | 1-253 |
| Cow position: | chr28:34696326-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-382 |
| Cow position: | chr28:7758486-7758867 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 1-386 |
| Cow position: | chr28:9290330-9290713 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 1-459 |
| Cow position: | chr28:7757746-7758204 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 292 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 1-459 |
| Cow position: | chr28:9298728-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 67 |
| Conread position: | 1-470 |
| Cow position: | chr28:9253181-9253651 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 314, 308 |
| Conread position: | 1-470 |
| Cow position: | chr28:9290166-9290629 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 1-483 |
| Cow position: | chr28:34696074-34696556 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-499 |
| Cow position: | chr28:7810426-7810915 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 300 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 166, 104 |
| Conread position: | 1-503 |
| Cow position: | chr28:9253097-9253599 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 115 |
| Conread position: | 1-504 |
| Cow position: | chr28:7757494-7757997 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 1-504 |
| Cow position: | chr28:7757662-7758165 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 41, 58 |
| Conread position: | 1-512 |
| Cow position: | chr28:7757578-7758089 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 139 |
| Conread position: | 1-512 |
| Cow position: | chr28:34695906-34696417 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 325 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 47, 76 |
| Conread position: | 1-521 |
| Cow position: | chr28:11333891-11333375 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 328 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 108, 115 |
| Conread position: | 1-531 |
| Cow position: | chr28:9298646-9299169 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 130, 20 |
| Conread position: | 3-434 |
| Cow position: | chr28:33210223-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 50 |
| Conread position: | 4-421 |
| Cow position: | chr28:7757917-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 266 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 130, 136 |
| Conread position: | 4-503 |
| Cow position: | chr28:7757413-7757912 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 4-503 |
| Cow position: | chr28:9253016-9253515 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 306 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 129, 137 |
| Conread position: | 4-512 |
| Cow position: | chr28:9252932-9253440 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 315 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 6-485 |
| Cow position: | chr28:7758407-7758886 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 425, 368 |
| Conread position: | 6-515 |
| Cow position: | chr28:7758323-7758833 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 129, 134 |
| Conread position: | 7-503 |
| Cow position: | chr28:11334053-11333557 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 305 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 7-522 |
| Cow position: | chr28:34695996-34696512 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 507, 0 |
| Conread position: | 20-386 |
| Cow position: | chr28:34673368-34673734 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 114, 124 |
| Conread position: | 60-471 |
| Cow position: | chr28:9290305-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 255, 70 |
| Conread position: | 61-454 |
| Cow position: | chr28:11333747-11333360 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 281, 0 |
| Conread position: | 67-503 |
| Cow position: | chr28:7757896-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-504 |
| Cow position: | chr28:7757392-7757829 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 68-504 |
| Cow position: | chr28:7810325-7810752 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 41, 47 |
| Conread position: | 69-443 |
| Cow position: | chr28:7810569-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 246, 240 |
| Conread position: | 69-512 |
| Cow position: | chr28:9290066-9290503 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 71 |
| Conread position: | 69-514 |
| Cow position: | chr28:9252747-9253190 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 161, 145 |
| Conread position: | 70-503 |
| Cow position: | chr28:11334242-11333809 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 124 |
| Conread position: | 80-503 |
| Cow position: | chr28:9298556-9298977 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 82-337 |
| Cow position: | chr28:34696323-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 82-503 |
| Cow position: | chr28:11333894-11333473 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 268 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 373, 381 |
| Conread position: | 82-515 |
| Cow position: | chr28:11334146-11333713 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 229, 237 |
| Conread position: | 87-440 |
| Cow position: | chr28:9299217-9299570 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 311, 320 |
| Conread position: | 92-472 |
| Cow position: | chr28:34673356-34673736 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 114-465 |
| Cow position: | chr28:7810287-7810629 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 114-491 |
| Cow position: | chr28:33210251-33210629 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 315, 0 |
| Conread position: | 115-376 |
| Cow position: | chr28:9298925-9299184 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 183, 70 |
| Conread position: | 116-499 |
| Cow position: | chr28:7757357-7757740 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 20, 28 |
| Conread position: | 174-499 |
| Cow position: | chr28:33210227-33210552 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 196-446 |
| Cow position: | chr28:7810285-7810535 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 119, 97 |
| Conread position: | 265-512 |
| Cow position: | chr28:33210234-33210481 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 68 |
| Conread position: | 279-499 |
| Cow position: | chr28:7810284-7810504 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 110, 104 |
Show alignments to all cow chromosomes.