Cow genome map
| Conread name: | rpigcb_17958.y1 |
| Conread position: | 1-338 |
| Cow position: | chr1:27493961-27494298 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 1-342 |
| Cow position: | chr1:9377499-9377132 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 147 |
| Conread position: | 1-343 |
| Cow position: | chr1:31239238-31238887 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 132 |
| Conread position: | 1-343 |
| Cow position: | chr1:38478295-38478653 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 1-390 |
| Cow position: | chr1:8745488-8745907 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 1-397 |
| Cow position: | chr1:21458682-21459096 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 1-502 |
| Cow position: | chr1:79589850-79590371 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 1-511 |
| Cow position: | chr1:21576538-21577071 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 132 |
| Conread position: | 1-511 |
| Cow position: | chr1:56726159-56726686 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 133 |
| Conread position: | 1-634 |
| Cow position: | chr1:89484106-89484764 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 1-636 |
| Cow position: | chr1:18962739-18962081 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 136 |
| Conread position: | 1-636 |
| Cow position: | chr1:31415233-31414558 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 1-636 |
| Cow position: | chr1:40058095-40058761 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 1-636 |
| Cow position: | chr1:59483873-59483199 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 137 |
| Conread position: | 1-636 |
| Cow position: | chr1:67005871-67006542 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 136 |
| Conread position: | 1-636 |
| Cow position: | chr1:91105032-91105706 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 1-637 |
| Cow position: | chr1:16798104-16797436 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 136 |
| Conread position: | 1-637 |
| Cow position: | chr1:54932918-54933596 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 1-637 |
| Cow position: | chr1:57659609-57660266 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 131 |
| Conread position: | 1-637 |
| Cow position: | chr1:63045159-63044492 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 137 |
| Conread position: | 1-637 |
| Cow position: | chr1:76872872-76873546 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 1-638 |
| Cow position: | chr1:93857513-93858192 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 1-641 |
| Cow position: | chr1:19441535-19440872 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 1-641 |
| Cow position: | chr1:22012971-22012290 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 122 |
| Conread position: | 1-641 |
| Cow position: | chr1:24441057-24440388 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 117 |
| Conread position: | 1-641 |
| Cow position: | chr1:28876082-28876770 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 1-641 |
| Cow position: | chr1:47454987-47454308 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 1-641 |
| Cow position: | chr1:52755542-52754862 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 112 |
| Conread position: | 1-641 |
| Cow position: | chr1:61747175-61746508 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 136 |
| Conread position: | 1-641 |
| Cow position: | chr1:72986448-72987128 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 1-641 |
| Cow position: | chr1:86705141-86705809 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 132 |
| Conread position: | 2-622 |
| Cow position: | chr1:73443858-73443220 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 2-636 |
| Cow position: | chr1:29037533-29038207 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 136 |
| Conread position: | 2-641 |
| Cow position: | chr1:18024805-18024147 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 24 |
| Conread position: | 3-641 |
| Cow position: | chr1:11854960-11854283 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 135 |
| Conread position: | 3-641 |
| Cow position: | chr1:30532026-30531361 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 6 |
| Conread position: | 4-641 |
| Cow position: | chr1:25552800-25553475 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 5-463 |
| Cow position: | chr1:31191421-31190950 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 332 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 49, 84 |
| Conread position: | 11-636 |
| Cow position: | chr1:3970264-3969618 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 127 |
| Conread position: | 13-636 |
| Cow position: | chr1:51883617-51884269 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 125 |
| Conread position: | 18-504 |
| Cow position: | chr1:30034637-30035136 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 110 |
| Conread position: | 18-641 |
| Cow position: | chr1:89186440-89185792 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 72 |
| Conread position: | 22-641 |
| Cow position: | chr1:24594622-24595259 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 25-561 |
| Cow position: | chr1:70051255-70051812 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 107 |
| Conread position: | 28-640 |
| Cow position: | chr1:71791939-71792601 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 116 |
| Conread position: | 32-641 |
| Cow position: | chr1:30371926-30372563 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 106 |
| Conread position: | 32-641 |
| Cow position: | chr1:53519687-53520319 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 59-485 |
| Cow position: | chr1:24572087-24571643 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 79 |
| Conread position: | 59-637 |
| Cow position: | chr1:24562700-24562084 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 79 |
| Conread position: | 59-637 |
| Cow position: | chr1:57758967-57759578 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 75 |
| Conread position: | 75-514 |
| Cow position: | chr1:11289321-11288854 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 59 |
| Conread position: | 75-641 |
| Cow position: | chr1:53368279-53368854 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 94-641 |
| Cow position: | chr1:30494656-30495227 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 39 |
| Conread position: | 106-343 |
| Cow position: | chr1:98534696-98534944 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 113-604 |
| Cow position: | chr1:67913181-67913714 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 14 |
| Conread position: | 119-636 |
| Cow position: | chr1:73463077-73463634 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 200 |
| Conread position: | 120-426 |
| Cow position: | chr1:31707596-31707926 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 171, 13 |
| Conread position: | 134-627 |
| Cow position: | chr1:34858564-34858041 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 150 |
| Conread position: | 143-641 |
| Cow position: | chr1:55328090-55327572 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 13 |
| Conread position: | 177-640 |
| Cow position: | chr1:38545547-38545044 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 22 |
| Conread position: | 195-526 |
| Cow position: | chr1:40532678-40532336 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 22 |
| Conread position: | 240-641 |
| Cow position: | chr1:10033771-10034200 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 145 |
| Conread position: | 245-641 |
| Cow position: | chr1:22730331-22729916 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 302 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 46, 170 |
| Conread position: | 289-636 |
| Cow position: | chr1:9377077-9376711 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 259 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 46, 110 |
| Conread position: | 290-637 |
| Cow position: | chr1:28176051-28176423 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 112 |
| Conread position: | 290-641 |
| Cow position: | chr1:2744404-2744772 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 104 |
| Conread position: | 290-641 |
| Cow position: | chr1:4375489-4375130 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 107 |
| Conread position: | 290-641 |
| Cow position: | chr1:68281844-68282210 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 139 |
| Conread position: | 295-616 |
| Cow position: | chr1:6765797-6765454 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 105 |
Show alignments to all cow chromosomes.