Cow genome map
| Conread name: | rpigcb_17958.y1 |
| Conread position: | 1-343 |
| Cow position: | chr16:49170714-49170372 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 25, 123 |
| Conread position: | 1-461 |
| Cow position: | chr16:31586442-31585959 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 132 |
| Conread position: | 1-509 |
| Cow position: | chr16:49219694-49219162 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 84 |
| Conread position: | 1-511 |
| Cow position: | chr16:37925721-37925191 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 1-511 |
| Cow position: | chr16:45704537-45704005 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 30 |
| Conread position: | 1-548 |
| Cow position: | chr16:20377716-20378289 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 1-554 |
| Cow position: | chr16:44049669-44049074 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 109 |
| Conread position: | 1-589 |
| Cow position: | chr16:14352426-14351798 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 1-636 |
| Cow position: | chr16:14100108-14100780 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 1-636 |
| Cow position: | chr16:46554676-46555354 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 137 |
| Conread position: | 1-636 |
| Cow position: | chr16:47403638-47404312 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 135 |
| Conread position: | 1-637 |
| Cow position: | chr16:12535684-12535035 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 1-637 |
| Cow position: | chr16:13422665-13421993 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 110 |
| Conread position: | 1-637 |
| Cow position: | chr16:49253984-49253335 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 138 |
| Conread position: | 1-640 |
| Cow position: | chr16:3332166-3332825 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 1-640 |
| Cow position: | chr16:12161025-12160348 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 1-640 |
| Cow position: | chr16:37478606-37477925 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 102 |
| Conread position: | 1-641 |
| Cow position: | chr16:2724968-2724287 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 1-641 |
| Cow position: | chr16:3769756-3769071 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 132 |
| Conread position: | 1-641 |
| Cow position: | chr16:26499938-26500567 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 77 |
| Conread position: | 1-641 |
| Cow position: | chr16:45608669-45609345 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 2-499 |
| Cow position: | chr16:25087863-25088398 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 130 |
| Conread position: | 2-518 |
| Cow position: | chr16:54180098-54179563 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 2-636 |
| Cow position: | chr16:40790-41469 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 130 |
| Conread position: | 2-641 |
| Cow position: | chr16:41164516-41163839 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 130 |
| Conread position: | 3-641 |
| Cow position: | chr16:2233464-2232790 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 5-485 |
| Cow position: | chr16:12244783-12244278 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 133 |
| Conread position: | 6-637 |
| Cow position: | chr16:49231022-49230376 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 126 |
| Conread position: | 6-641 |
| Cow position: | chr16:56913970-56913304 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 95 |
| Conread position: | 7-641 |
| Cow position: | chr16:2480884-2480222 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 131 |
| Conread position: | 12-317 |
| Cow position: | chr16:19887286-19887605 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 126 |
| Conread position: | 25-510 |
| Cow position: | chr16:37455199-37454695 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 113 |
| Conread position: | 26-518 |
| Cow position: | chr16:45559573-45560090 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 112 |
| Conread position: | 34-544 |
| Cow position: | chr16:15256179-15255667 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 100 |
| Conread position: | 55-635 |
| Cow position: | chr16:1958410-1957795 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 75 |
| Conread position: | 57-518 |
| Cow position: | chr16:37058695-37058213 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 57-641 |
| Cow position: | chr16:599743-600357 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 57-641 |
| Cow position: | chr16:45533782-45534390 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 36 |
| Conread position: | 76-518 |
| Cow position: | chr16:8482285-8481829 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 85-641 |
| Cow position: | chr16:5756281-5756872 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 115-381 |
| Cow position: | chr16:43801740-43802018 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 114, 18 |
| Conread position: | 118-511 |
| Cow position: | chr16:55681890-55682293 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 15 |
| Conread position: | 132-337 |
| Cow position: | chr16:14569948-14570152 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 111 |
| Conread position: | 132-518 |
| Cow position: | chr16:41805052-41804657 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 89 |
| Conread position: | 137-636 |
| Cow position: | chr16:49127295-49126779 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 30 |
| Conread position: | 151-641 |
| Cow position: | chr16:18745622-18745100 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 269 |
| Conread position: | 160-641 |
| Cow position: | chr16:7457565-7457050 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 90 |
| Conread position: | 165-432 |
| Cow position: | chr16:16237591-16237306 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 175-641 |
| Cow position: | chr16:41834313-41834802 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 99 |
| Conread position: | 193-634 |
| Cow position: | chr16:4721934-4722408 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 220 |
| Conread position: | 203-629 |
| Cow position: | chr16:23809981-23810440 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 221 |
| Conread position: | 261-637 |
| Cow position: | chr16:46386012-46385615 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 139 |
| Conread position: | 290-604 |
| Cow position: | chr16:7541045-7541380 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 112 |
| Conread position: | 290-636 |
| Cow position: | chr16:42745913-42745552 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 50 |
Show alignments to all cow chromosomes.