Cow genome map
| Conread name: | rpigcb_17958.y1 |
| Conread position: | 1-333 |
| Cow position: | chr3:5446044-5445701 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 1-343 |
| Cow position: | chr3:61277435-61277792 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 1-397 |
| Cow position: | chr3:57554645-57555065 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 1-473 |
| Cow position: | chr3:19947090-19947568 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 138 |
| Conread position: | 1-499 |
| Cow position: | chr3:42977716-42977198 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 1-511 |
| Cow position: | chr3:64875654-64876179 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 25 |
| Conread position: | 1-604 |
| Cow position: | chr3:57742387-57743023 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 1-633 |
| Cow position: | chr3:23010240-23010894 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 1-636 |
| Cow position: | chr3:7246236-7245563 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 1-636 |
| Cow position: | chr3:14679955-14680627 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 1-636 |
| Cow position: | chr3:16225745-16226420 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 1-636 |
| Cow position: | chr3:26743001-26742331 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 1-636 |
| Cow position: | chr3:30616069-30615398 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 1-636 |
| Cow position: | chr3:37971911-37972572 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 115 |
| Conread position: | 1-636 |
| Cow position: | chr3:49563878-49564562 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 144 |
| Conread position: | 1-637 |
| Cow position: | chr3:48603119-48603807 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 1-637 |
| Cow position: | chr3:78024562-78023901 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 1-639 |
| Cow position: | chr3:2366022-2365368 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 1-641 |
| Cow position: | chr3:19753860-19753185 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 132 |
| Conread position: | 1-641 |
| Cow position: | chr3:23204805-23204128 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 1-641 |
| Cow position: | chr3:24443226-24442556 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 1-641 |
| Cow position: | chr3:24586361-24585677 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 1-641 |
| Cow position: | chr3:36875199-36874511 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 1-641 |
| Cow position: | chr3:66623081-66623736 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 2-407 |
| Cow position: | chr3:63000489-63000078 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 136 |
| Conread position: | 2-505 |
| Cow position: | chr3:48240123-48240652 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 2-584 |
| Cow position: | chr3:6688682-6689323 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 137 |
| Conread position: | 2-640 |
| Cow position: | chr3:42846222-42846893 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 114 |
| Conread position: | 2-641 |
| Cow position: | chr3:10243530-10244210 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 136 |
| Conread position: | 3-636 |
| Cow position: | chr3:45977372-45978045 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 129 |
| Conread position: | 4-637 |
| Cow position: | chr3:70914394-70913716 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 136 |
| Conread position: | 5-636 |
| Cow position: | chr3:49605567-49604901 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 134 |
| Conread position: | 5-640 |
| Cow position: | chr3:57481864-57481196 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 6-637 |
| Cow position: | chr3:58950334-58951004 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 132 |
| Conread position: | 9-622 |
| Cow position: | chr3:2904561-2903924 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 80 |
| Conread position: | 10-633 |
| Cow position: | chr3:22724894-22724241 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 236 |
| Conread position: | 11-636 |
| Cow position: | chr3:49908145-49907489 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 127 |
| Conread position: | 26-354 |
| Cow position: | chr3:3060746-3061088 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 63 |
| Conread position: | 44-557 |
| Cow position: | chr3:39327463-39328005 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 57-641 |
| Cow position: | chr3:34557441-34556839 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 65-487 |
| Cow position: | chr3:34116428-34115981 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 33 |
| Conread position: | 68-637 |
| Cow position: | chr3:6442008-6442613 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 58 |
| Conread position: | 70-641 |
| Cow position: | chr3:4039990-4039385 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 75-637 |
| Cow position: | chr3:25056635-25057210 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 94-633 |
| Cow position: | chr3:19215882-19216440 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 33 |
| Conread position: | 94-636 |
| Cow position: | chr3:42508243-42507668 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 39 |
| Conread position: | 96-640 |
| Cow position: | chr3:49387623-49388199 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 21 |
| Conread position: | 103-641 |
| Cow position: | chr3:14863859-14864433 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 30 |
| Conread position: | 111-364 |
| Cow position: | chr3:51255882-51256133 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 151, 22 |
| Conread position: | 145-641 |
| Cow position: | chr3:40004463-40003959 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 48 |
| Conread position: | 156-292 |
| Cow position: | chr3:36402851-36402987 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 199-641 |
| Cow position: | chr3:59864552-59865030 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 216 |
| Conread position: | 211-636 |
| Cow position: | chr3:13248938-13248475 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 203 |
| Conread position: | 211-641 |
| Cow position: | chr3:23217242-23216781 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 50 |
| Conread position: | 212-510 |
| Cow position: | chr3:34464450-34464770 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 76, 207 |
| Conread position: | 243-636 |
| Cow position: | chr3:77366570-77366166 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 108 |
| Conread position: | 254-640 |
| Cow position: | chr3:37599861-37600280 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 162 |
| Conread position: | 273-637 |
| Cow position: | chr3:41057116-41057506 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 132 |
| Conread position: | 290-511 |
| Cow position: | chr3:68043332-68043099 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 41, 94 |
| Conread position: | 290-632 |
| Cow position: | chr3:14724292-14724647 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 290-641 |
| Cow position: | chr3:14613205-14613578 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 290-641 |
| Cow position: | chr3:22272505-22272149 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 40, 109 |
Show alignments to all cow chromosomes.