Cow genome map

Conread name: rpigcb_17958.y1

Conread position: 1-290
Cow position: chrX:16023824-16024113 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 127

Conread position: 1-292
Cow position: chrX:24444306-24444011 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 123

Conread position: 1-343
Cow position: chrX:20741608-20741960 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 55

Conread position: 1-359
Cow position: chrX:6854951-6854598 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 54

Conread position: 1-365
Cow position: chrX:33829794-33830180 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 20

Conread position: 1-454
Cow position: chrX:27497581-27498060 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 137

Conread position: 1-483
Cow position: chrX:39697517-39698021 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 137

Conread position: 1-499
Cow position: chrX:21818699-21818204 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 46

Conread position: 1-501
Cow position: chrX:23222277-23221767 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 140

Conread position: 1-511
Cow position: chrX:25818070-25817534 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 139

Conread position: 1-514
Cow position: chrX:7484556-7485099 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 137

Conread position: 1-589
Cow position: chrX:8482187-8482819 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 147

Conread position: 1-604
Cow position: chrX:15122412-15121794 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 132

Conread position: 1-608
Cow position: chrX:21414616-21415266 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 131

Conread position: 1-629
Cow position: chrX:13406537-13405870 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 131

Conread position: 1-631
Cow position: chrX:22818823-22819477 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 216

Conread position: 1-633
Cow position: chrX:3650078-3649399 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 132

Conread position: 1-633
Cow position: chrX:23279776-23280433 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 131

Conread position: 1-634
Cow position: chrX:29099169-29099840 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 47

Conread position: 1-636
Cow position: chrX:2560198-2559533 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 79

Conread position: 1-636
Cow position: chrX:5320964-5320292 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 137

Conread position: 1-636
Cow position: chrX:8640537-8641215 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 137

Conread position: 1-636
Cow position: chrX:9169856-9169187 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 137

Conread position: 1-636
Cow position: chrX:16278409-16279079 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 20

Conread position: 1-636
Cow position: chrX:21343145-21343821 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 137

Conread position: 1-636
Cow position: chrX:22564935-22564260 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 137

Conread position: 1-636
Cow position: chrX:23342242-23341565 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 132

Conread position: 1-636
Cow position: chrX:27317980-27318658 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 131

Conread position: 1-636
Cow position: chrX:28518962-28518293 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 20

Conread position: 1-636
Cow position: chrX:28753587-28752913 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 137

Conread position: 1-636
Cow position: chrX:29912090-29912766 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 141

Conread position: 1-636
Cow position: chrX:39713300-39713978 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 137

Conread position: 1-637
Cow position: chrX:23134346-23135006 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 137

Conread position: 1-637
Cow position: chrX:27983604-27982942 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 129

Conread position: 1-639
Cow position: chrX:36535980-36535305 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 137

Conread position: 1-640
Cow position: chrX:28625004-28624330 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 20

Conread position: 1-641
Cow position: chrX:10867101-10866435 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 19

Conread position: 1-641
Cow position: chrX:11074404-11073776 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 20

Conread position: 1-641
Cow position: chrX:16702431-16703103 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 106

Conread position: 1-641
Cow position: chrX:21582191-21582874 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 422

Conread position: 1-641
Cow position: chrX:22492785-22493439 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 137

Conread position: 1-641
Cow position: chrX:23039233-23038565 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 117

Conread position: 1-641
Cow position: chrX:23395356-23396039 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 131

Conread position: 1-641
Cow position: chrX:26442500-26441828 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 128

Conread position: 1-641
Cow position: chrX:26530722-26531391 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 131

Conread position: 1-641
Cow position: chrX:27615562-27616235 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 137

Conread position: 1-641
Cow position: chrX:31728216-31728895 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 131

Conread position: 1-641
Cow position: chrX:32145507-32144836 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 131

Conread position: 1-641
Cow position: chrX:35938310-35937653 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 23

Conread position: 2-516
Cow position: chrX:5365841-5365302 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 131

Conread position: 2-634
Cow position: chrX:34760816-34761491 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 136

Conread position: 2-636
Cow position: chrX:15260865-15260192 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 136

Conread position: 2-636
Cow position: chrX:29082826-29083505 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 132

Conread position: 2-637
Cow position: chrX:322666-323343 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 136

Conread position: 2-637
Cow position: chrX:11976696-11976018 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 90

Conread position: 2-641
Cow position: chrX:5354550-5353871 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 130

Conread position: 2-641
Cow position: chrX:23022068-23022745 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 131

Conread position: 2-641
Cow position: chrX:28879826-28879174 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 85

Conread position: 2-641
Cow position: chrX:44193685-44193008 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 15

Conread position: 3-639
Cow position: chrX:14802068-14801388 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 136

Conread position: 4-518
Cow position: chrX:4767455-4767985 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 83

Conread position: 4-627
Cow position: chrX:21226233-21226895 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 135

Conread position: 4-634
Cow position: chrX:14125493-14124821 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 134

Conread position: 8-609
Cow position: chrX:40070843-40070210 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 111

Conread position: 8-636
Cow position: chrX:22579625-22578962 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 120

Conread position: 18-640
Cow position: chrX:22869585-22870250 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 114

Conread position: 23-637
Cow position: chrX:15140756-15140120 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 112

Conread position: 57-641
Cow position: chrX:34442619-34442011 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 72

Conread position: 62-639
Cow position: chrX:45401188-45400610 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 201

Conread position: 79-633
Cow position: chrX:17890020-17889458 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 55

Conread position: 85-641
Cow position: chrX:17664078-17663487 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 43

Conread position: 99-641
Cow position: chrX:6406208-6406778 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 29

Conread position: 104-593
Cow position: chrX:11499917-11499399 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 29

Conread position: 126-641
Cow position: chrX:18243871-18244414 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 281

Conread position: 134-637
Cow position: chrX:39556902-39556367 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 296

Conread position: 137-518
Cow position: chrX:12289624-12290017 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 72

Conread position: 205-641
Cow position: chrX:27095094-27095551 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 205

Conread position: 245-641
Cow position: chrX:41879922-41879498 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 282

Conread position: 290-636
Cow position: chrX:16046201-16046574 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 116

Conread position: 290-641
Cow position: chrX:39701919-39702283 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 78

Show alignments to all cow chromosomes.